Buhrmann, T., Paolo, E. A. D., & Barandiaran, X. (2013). A dynamical systems account of sensorimotor contingencies. Frontiers in Cognition, 4:, 285. doi:10.3389/fpsyg.2013.00285

Egbert, M. D., Barandiaran, X. E., & Di Paolo, E. A. (2012). Behavioral Metabolution: The Adaptive and Evolutionary Potential of Metabolism-Based Chemotaxis. Artificial Life, 18(1), 1–25. doi:10.1162/artl_a_00047 (Download)

Xenakis, I., Arnellos, A., & Darzentas, J. (2012). The functional role of emotions in aesthetic judgment. New Ideas in Psychology, 30(2), 212–226. doi:10.1016/j.newideapsych.2011.09.003 (Download)

Arrieta-Valero, I. (2012). El ejercicio razonable de la autonomía del paciente. DILEMATA. International Journal of Applied Ethics, año 4 (2012), n^o 8., 27–32. Retrieved from http://www.dilemata.net/revista/index.php/dilemata/article/view/111/113 (Download)

Ruiz-Mirazo, K., & Moreno, A. (2012). Autonomy in evolution: from minimal to complex life. Synthese, 185(1), 21–52. doi:10.1007/s11229-011-9874-z

Rendón, A., Carton, D. G., Sot, J., García-Pacios, M., Montes, R., Valle, M., … Ruiz-Mirazo, K. (2012). Model Systems of Precursor Cellular Membranes: Long-Chain Alcohols Stabilize Spontaneously Formed Oleic Acid Vesicles. Biophysical Journal, 102(2), 278–286. doi:10.1016/j.bpj.2011.12.026

Xenakis, I., Arnellos, A., Spyrou, T., & Darzentas, J. (2012). Modelling the Aesthetic Judgement: an Interactive-semiotic Perspective. Cybernetics & Human Knowing, forthcoming.

Arnellos, A., Bruni, L., El-Hani, C. N., & Collier, J. (2012). Anticipatory Functions, Digital-Analog forms and Biosemiotics: Integrating the tools to model Information and Normativity in Autonomous Biological Agents. Biosemiotics, 5(3), forthcoming.

Casado, A., & Moreno, A. (2011). Autonomy Beyond the Brain: What Neuroscience Offers to a More Interactive, Relational Bioethics. The American Journal of Bioethics – Neuroscience, 2(3), 54–56.

Vicente, A., & Martinez Manrique, F. (2011). Inner Speech: Nature and Functions. Philosophy Compass, 6(3), 209–219. doi:10.1111/j.1747-9991.2010.00369.x (Download)

Egbert, M. D., Barandiaran, X. E., & Di Paolo, E. A. (2011). Behavioral Metabolution: The Adaptive and Evolutionary Potential of Metabolism-Based Chemotaxis. Artificial Life, 18(1), 1–25. doi:10.1162/artl_a_00047 (Download)

Arnellos, A., Lekkas, D., Zissis, D., Spyrou, T., & Darzentas, J. (2011). Fair digital signing: The structural reliability of signed documents. Computers & Security, 30(8), 580–596. doi:10.1016/j.cose.2011.09.001

Bermejo-Luque, L., & Casado, Antonio. (2011). Bancos, bibliotecas y cementerios: usos de las analogías en el razonamiento sobre biotecnología. THEORIA. An International Journal for Theory, History and Foundations of Science, 26(71), 195–212.

Ruiz-Mirazo, K., & Moreno, A. (2011). The Need for a Universal Definition of Life in Twenty-first-century Biology. Information and Living Systems: Philosophical and Scientific Perspectives, 1.

Arrieta-Valero, I. (2011). Deliberando en bioética: la gran suerte de contar con el cine [Review of MORATALLA, T. M., (2010), Bioética y cine. De la narración a la deliberación, Madrid: San Pablo]. DILEMATA. International Journal of Applied Ethics, año 2 (2011), n^o 6., 159–162. Retrieved from http://www.dilemata.net/revista/index.php/dilemata/article/view/97/101 (Download)

Santos, B., Barandiaran, X. E., & Husbands, P. (2011). Neurodynamic regimes of phase relation and behavior in robotic models. BMC Neuroscience, 12(Suppl 1), P155. (Download)

Moreno, A., & Ruiz-Mirazo, K. (2011). The Informational Nature of Biological Causality. Information and Living Systems: Philosophical and Scientific Perspectives, 157.

Piedrafita, G., Mavelli, F., Morán, F., & Ruiz-Mirazo, K. (2011). On the Transition from Prebiotic to Proto-biological Membranes: From “Self-assembly”to “Self-production”. Advances in Artificial Life. Darwin Meets von Neumann, 256–264.

Ruiz-Mirazo, K., Piedrafita, G., Ciriaco, F., & Mavelli, F. (2011). Stochastic Simulations of Mixed-Lipid Compartments: From Self-Assembling Vesicles to Self-Producing Protocells. Software Tools and Algorithms for Biological Systems, 689–696.

Vicente, A. (2010). Clusters: On the Structure of Lexical Concepts. Dialectica, 64(1), 79–106. doi:10.1111/j.1746-8361.2010.01223.x (Download)

Bich, L. (2010). Complex emergence and the living organization: an epistemological framework for biology. Synthese. doi:10.1007/s11229-010-9722-6 (Download)

Bich, L. (2010). Biological Autonomy and Systemic Integration. Origins of Life and Evolution of Biospheres, 40, 480–484.

Bich, L., Bocchi, G., & Damiano, L. (2010). An Epistemology of Contingency: Chance and Determinism at the Origin of Life. Origins of Life and Evolution of Biospheres, 40, 370–375.

Piedrafita, G., Shirt-Ediss, B., Mavelli, F., Monnard, P. A., & Ruiz-Mirazo, K. (2010). “In Vitro”and “In Silico”Complementary Studies on the Physical Properties of Prebiotic Compartments.

Mavelli, F., & Ruiz-Mirazo, K. (2010). ENVIRONMENT: a computational platform to stochastically simulate reacting and self-reproducing lipid compartments. Physical biology, 7, 036002.

Martínez-Manrique, F., & Vicente, A. (2010). What the…!’ The role of inner speech in conscious thought. Journal of Consciousness Studies, 17(9-10), 141–67. (Download)

Shirt-Ediss, B., Mavelli, F., & Ruiz-Mirazo, K. (2010). To Burst or Not To Burst: Osmotic Regulation in a Protocell Model Through Precursor Mechano-Sensitive Channels.

Arnellos, A., Spyrou, T., & Darzentas, J. (2010). Towards the naturalization of agency based on an interactivist account of autonomy. New Ideas in Psychology, 28(3), 296–311. doi:10.1016/j.newideapsych.2009.09.005 (Download)

Ruiz-Mirazo, K., Peretó, J., & Moreno, A. (2010). Defining life or bringing biology to life. Origins of Life and Evolution of Biospheres, 40(2), 203–213.

Arrieta-Valero, I., & Casado, A. (2010). La ética asistencial entre la autonomía y el paternalismo [Review of NYS, T., DENIER, Y., VANDEVELDE, T. (eds.) (2007), Autonomy and Paternalism. Reflections on the Theory and Practice of Health Care. Leuven: Peeters]. DILEMATA. International Journal of Applied Ethics, año 2 (2010), n^o 3., 135–137. Retrieved from http://www.dilemata.net/revista/index.php/dilemata/article/view/41/36 (Download)

Saborido, C., Mossio, M., & Ruiz-Mirazo, K. (2010). In Search for Conceptual Bridges: A Review of “Functions in Biological and Artificial Worlds” Functions in Biological and Artificial Worlds. Comparative Philosophical Perspectives. U. Krohs and P. Kroes (Eds.). Vienna Series in Theoretical Biology.(2009, MIT Press.) 302 pages. Artificial Life, 16(4), 337–340.

Egbert, M. D., Barandiaran, X. E., & Di Paolo, E. A. (2010). A Minimal Model of Metabolism-Based Chemotaxis. PLoS Comput Biol, 6(12), e1001004. doi:10.1371/journal.pcbi.1001004 (Download)

Barandiaran, X. E., & Chemero, A. (2009). Animats in the Modeling Ecosystem. Adaptive Behavior, 17(4), 287–292. doi:10.1177/1059712309340847 (Download)

Barandiaran, X. E., Di Paolo, E., & Rohde, M. (2009). Defining Agency: Individuality, Normativity, Asymmetry, and Spatio-temporality in Action. Adaptive Behavior, 17(5), 367–386. doi:10.1177/1059712309343819 (Download)

Moreno, A., & Ruiz-Mirazo, K. (2009). The problem of the emergence of functional diversity in prebiotic evolution. Biology & Philosophy, 24(5), 585–605. doi:10.1007/s10539-009-9178-6 (Download)

Etxeberria, A., & Ruiz-Mirazo, K. (2009). The challenging biology of transients. EMBO reports, 10, S33–S36.

Moreno, A., & Ruiz-Mirazo, K. (2009). The problem of the emergence of functional diversity in prebiotic evolution. Biology and Philosophy, 24(5), 585–605.

El-Hani, C. N., Arnellos, A., & Queiroza, J. (2008). Modeling a Semiotic Process in the Immune System: Signal Transduction in B-cells Activation. tripleC - Cognition, Communication, Co-operation, 5(2), 24–36. Retrieved from http://www.triple-c.at/index.php/tripleC/article/viewArticle/56 (Download)

Arnellos, A., Spyrou, T., & Darzentas, J. (2008). Emergence and Downward Causation in Contemporary Artificial Agents: Implications for their Autonomy and Some Design Guidelines. Cybernetics & Human Knowing, 15(3-4), 15–41. (Download)

Ruiz-Mirazo, K., Umerez, J., & Moreno, A. (2008). Enabling conditions for “open-ended evolution”. Biology and Philosophy, 23(1), 67–85.

Barandiaran, X. E., & Moreno, A. (2008). Adaptivity: From Metabolism to Behavior. Adaptive Behavior, 16(5), 325–344. doi:10.1177/1059712308093868 (Download)

Neuman, Y., Arnellos, A., & Nave, O. (2008). Sign-Mediated Concept Formation. The American Journal of Semiotics, 24, 107–133. Retrieved from http://secure.pdcnet.org/pdc/bvdb.nsf/toc?openform&journal=pdc_ajs&yearrange=2001%20-%202011&category=0024_40911_2008#

Barandiaran, X., E., & Ruiz-Mirazo, K. (2008). Modelling autonomy: Simulating the essence of life and cognition. Biosystems, 91(2), 295–304. doi:10.1016/j.biosystems.2007.07.001 (Download)

Barandiaran, X., E., & Moreno, A. (2008). On the nature of neural information: A critique of the received view 50 years later. Neurocomputing, 71(4-6), 681–692. doi:10.1016/j.neucom.2007.09.014 (Download)

Ruiz-Mirazo, K., & Mavelli, F. (2008). On the way towards “basic autonomous agents”: Stochastic simulations of minimal lipid-peptide cells. Biosystems, 91(2), 374–387.

Amilburu, A. (2008). La masa sin cualidades. biTARTE, 45, 63–78.

Vicente, A., & Martínez‐manrique, F. (2008). Thought, Language, and the Argument from Explicitness. Metaphilosophy, 39(3), 381–401. doi:10.1111/j.1467-9973.2008.00545.x (Download)

Bich, L., & Damiano, L. (2008). Order in the Nothing: Autopoiesis and the Organizational Characterization of the Living. Electronic Journal of Theoretical Physics, 4(16), 343–373.

Mavelli, F., Lerario, M., & Ruiz-Mirazo, K. (2008). ENVIRONMENT’: a stochastic simulation platform to study protocell dynamics. Proceedings of BIOCOMP, 2, 934–941.

Mavelli, F., & Ruiz-Mirazo, K. (2007). Stochastic simulations of fatty-acid proto-cell models. Proceedings of SPIE, 6602, 66021B.

Frenz, H., Lappe, M., Kolesnik, M., & Buhrmann, T. (2007). Estimation of travel distance from visual motion in virtual environments. ACM Trans. Appl. Percept., 4(1). doi:10.1145/1227134.1227137

Ruiz-Mirazo, K., & Mavelli, F. (2007). Question 7: modelling minimal “lipid-peptide”cells. Origins of Life and Evolution of Biospheres, 37(4), 433–437.

Mavelli, F., & Ruiz-Mirazo, K. (2007). Question 8: bridging the gap between in silico and in vitro approaches to minimal cells. Origins of Life and Evolution of Biospheres, 37(4), 455–458.

Arnellos, A., Spyrou, T., & Darzentas, J. (2007). Cybernetic embodiment and the role of autonomy in the design process. Kybernetes, 36(9/10), 1207–1224. doi:10.1108/03684920710827247

Ruiz-Mirazo, K., & Mavelli, F. (2007). Simulation model for functionalized vesicles: lipid-peptide integration in minimal protocells. Advances in Artificial Life, 32–41.

Ruiz-Mirazo, K., Umerez, J., & Moreno, A. (2007). Enabling conditions for “open-ended evolution”. Biology & Philosophy, 23(1), 67–85. doi:10.1007/s10539-007-9076-8

Mavelli, F., & Ruiz-Mirazo, K. (2007). Stochastic simulations of minimal self-reproducing cellular systems. Philosophical Transactions of the Royal Society B: Biological Sciences, 362(1486), 1789.

Arnellos, Spyrou, & Darzentas, J. (2007). Exploring Creativity in the Design Process: A Systems-Semiotic Perspective. Cybernetics & Human Knowing, 14(1), 37–64. (Download)

Bich, L., & Damiano, L. (2007). Question 9: Theoretical and Artificial Construction of the Living: Redefining the Approach from an Autopoietic Point of View. Origins of Life and Evolution of Biospheres, 37(4-5), 459–464. doi:10.1007/s11084-007-9082-5 (Download)

Ruiz-Mirazo, K., Stano, P., & Luisi, P. L. (2006). Lysozyme effect on oleic acid/oleate vesicles. Journal of Liposome Research, 16(2), 143–154.

Barandiaran, X. E., & Moreno, A. (2006). On What Makes Certain Dynamical Systems Cognitive: A Minimally Cognitive Organization Program. Adaptive Behavior, 14(2), 171–185. doi:10.1177/105971230601400208 (Download)

Arnellos, A., Vosinakis, S., Spyrou, T., & Darzentas, J. (2006). The Emergence of Autonomous Representations in Artificial Agents. Journal of Computers, 1(6). doi:10.4304/jcp.1.6.29-36 (Download)

Ruiz-Mirazo, K., & Moreno, A. (2006). On the origins of information and its relevance for biological complexity. Biological Theory, 1(3), 227–229.

Barandiaran, X. E., & Lluis, G. (2006). Autonomía, Comunicación y Evolución en redes bacterianas y tecnológicas. biTARTE, (38), 35–60. (Download)

Vicente, A., & Martínez‐Manrique, F. (2005). Semantic Underdetermination and the Cognitive Uses of Language. Mind & Language, 20(5), 537–558. doi:10.1111/j.0268-1064.2005.00299.x (Download)

Arnellos, A., Spyrou, T., & Darzentas, J. (2005). Dynamic Interactions in Artificial Environments: Causal and Non-Causal Aspects for the Emergence of Meaning. Systemics, Cybernetics and Informatics, 3(1), 82–89. Retrieved from http://www.iiisci.org/Journal/CV$/sci/pdfs/P416905.pdf

Vicente, A., & Martínez‐Manrique, F. (2005). Semantic Underdetermination and the Cognitive Uses of Language. Mind & Language, 20(5), 537–558. doi:10.1111/j.0268-1064.2005.00299.x (Download)

Lappe, M., Frenz, H., Buhrmann, T., & Kolesnik, M. (2005). Virtual odometry from visual flow. Proceedings of SPIE, 5666(1), 493. doi:doi:10.1117/12.610863 (Download)

Moreno, A., & Barandiaran, X. E. (2004). A naturalized account of the inside-outside dichotomy. PHILOSOPHICA, 73, 11–26. (Download)

Velasco, C. A., Mohamad, Y., Gilman, A. S., Viorres, N., Vlachogiannis, E., Arnellos, A., & Darzentas, J. S. (2004). The need for user information and its relationship to device profiles. Universal Access in the Information Society, 3(1), 88–95. doi:10.1007/s10209-003-0075-5

Ruiz-Mirazo, K., & Moreno, A. (2004). Basic Autonomy as a Fundamental Step in the Synthesis of Life. Artificial Life, 10(3), 235–259. doi:10.1162/1064546041255584 (Download)

Ruiz-Mirazo, K., Pereto, J., & Moreno, A. (2004). A universal definition of life: autonomy and open-ended evolution. Origins of Life and Evolution of the Biosphere, 34(3), 323–346.

Moreno, A., & Ruiz-Mirazo, K. (2002). Key issues regarding the origin, nature, and evolution of complexity in nature: Information as a central concept to understand biological organization. Emergence, 4(1-2), 63–76.

Ruiz-Mirazo, K., & Moreno, A. (2000). Searching for the roots of autonomy: The natural and artificial paradigms revisited. Communication and Cognition–Artificial Intelligence, 17(3-4), 209–228.

Ruiz-Mirazo, K., Etxeberria, A., Moreno, A., & Ibáñez, J. (2000). Organisms and their place in biology. Theory in biosciences, 119(3), 209–233.

Ruiz-Mirazo, K., Moreno, A., Morán, F., Peretó, J., & Merelo, J. (1999). Designing a Simulation Model of a Self-Maintaining Cellular System. Advances in Artificial Life, 379–388.

Theraulaz, G., & Bonabeau, E. (1999). A brief history of stigmergy. Artificial life, 5(2), 97–116. (Download)

Bergareche, A. M., & Ruiz-Mirazo, K. (1999). Metabolism and the problem of its universalization. BioSystems, 49(1), 45–61.

Ruiz-Mirazo, K., Moreno, A., & Morán, F. (1998). Merging the energetic and the relational-constructive logic of life. Proceedings of Artificial Life VI, 448–451.

Ruiz-Mirazo, K., & Moreno, A. (1998). Autonomy and emergence: how systems become agents through the generation of functional constraints. Acta Polytechnica Scandinavica, Ma91, 273–282.

Barwich, A.-S., & Amilburu, A. (2012). Bridging Disciplines? An Enquiry on the Future of Natural Kinds in Philosophy and the Life Sciences. Biological Theory, 6(2), 187–190. Retrieved from http://link.springer.com/article/10.1007%2Fs13752-012-0025-7

Aguilera, M., Bedia, M., Barandiaran, X. E., & Serón, O. (2011). The adjustment-deployment dilemma in organism’s behaviour: theoretical characterization and a model. In Proceedings of the IEEE Symposium Series on Computational Intelligence - SSCI 2011 (p. in press). (Download)

Amilburu, A. (2011). An Organizational View of Biological Essences. In Proceedings of the ISHPSSB 2011 Conference (p. 52). Salt Lake City, Utah, USA.

Santos, B., Barandiaran, X. E., & Husbands, P. (2011). Metastable dynamical regimes in oscillatory network modulated by an agent’s sensorimotor loop. In Proceedings of the IEEE Symposium Series on Computational Intelligence - SSCI 2011 (p. in press). (Download)

Egbert, M. D., & Barandiaran, X. E. (2011). Quantifying Normative Behaviour and Precariousness in Adaptive Agency. In T. Lenaerts, M. Giacobini, H. Bersini, P. Bourgine, M. Dorigo, & R. Doursat (Eds.), Proceedings of the 11th European Conference on Artificial Life (pp. 210–218). Presented at the ECAL, MIT Press. (Download)

Amilburu, A., & Etxeberria, A. (2010). Clasificaciones y géneros naturales: ¿estipulación o descubrimiento? In A. Jaume, M. Liz, D. Pérez Chico, M. Ponte, & M. Vazquez (Eds.), Proceedings of the sixth meeting of the Spanish Society for Analytic Philosophy. Presented at the SEFA VI, Tenerife. (Download)

Egbert, M. D., Barandiaran, X. E., & Di Paolo, E. A. (2010). Behavioral Metabolution: Metabolism based behavior enables new forms of adaptation and evolution. In Artificial Life XII: Proceedings of the Twelfth International Conference on the Simulation and Synthesis of Living Systems. (Download)

Bich, L. (2009). Downward causation and relatedness in emergent systems: epistemological remarks (pp. 591–601). World Scientific Publishing Co. Pte. Ltd. doi:10.1142/9789812793478_0037 (Download)

Egbert, M. D., Di Paolo, E., & Barandiaran, X. E. (2009). Chemo-ethology of a adaptive protocell: Sensor-less sensitivity to implicit viability conditions. In Proceedings of the Ninth European Conference on Artificial Life (pp. 242–249). Presented at the ECAL09, Budapest: Springer Verlag. (Download)

Izquierdo, E., & Buhrmann, T. (2008). Analysis of a dynamical recurrent neural network evolved for two qualitatively different tasks: walking and chemotaxis. In S. Bullock, J. Noble, R. Watson, & M. Bedau (Eds.), Artificial Life XI: Proceedings of the Eleventh International Conference on the Simulation and Synthesis of Living Systems (pp. 257–264). MIT Press, Cambridge, MA. Retrieved from http://www.alifexi.org/papers/ALIFExi_pp257-264.pdf

Barandiaran, X. E., & Di Paolo, E. A. (2008). Artificial Mental Life. In S. Bullock, J. Noble, R. Watson, & M. Bedau (Eds.), Artificial Life XI: Proceedings of the Eleventh International Conference on the Simulation and Synthesis of Living Systems (p. 747). Cambridge, MA.: MIT Press. (Download)

Buhrmann, T., & Paolo, E. (2006). Biological Actuators Are Not Just Springs. In S. Nolfi, G. Baldassarre, R. Calabretta, J. C. T. Hallam, D. Marocco, J.-A. Meyer, … D. Parisi (Eds.), From Animals to Animats 9 (Vol. 4095, pp. 89–100). Berlin, Heidelberg: Springer Berlin Heidelberg. Retrieved from http://dblp.uni-trier.de/rec/bibtex/conf/sab/BuehrmannP06 (Download)

Barandiaran, X. E., & Moreno, A. (2006). ALife Models as Epistemic Artefacts. In Artificial Life X : Proceedings of the Tenth International Conference on the Simulation and Synthesis of Living Systems (pp. 513–519). The MIT Press (Bradford Books). (Download)

Barandiaran, X. E. (2004). Behavioral Adaptive Autonomy. A milestone on the Alife  route to AI? In J. Pollack, M. A. Bedau, P. Husbands, T. Ikegami, & R. A. Watson (Eds.), Artificial life IX: proceedings of the Ninth International Conference on the Simulation and Synthesis of Artificial Life (pp. 514–521). MIT Press. (Download)

Buhrmann, T., & Di Paolo, E. A. (2004). Closing the loop: Evolving a model-free visually guided robot arm. In Proceedings of the Ninth International Conference on the Simulation and Synthesis of Living Systems 9 (pp. 63–72). Presented at the Artificial Life IX, Boston, Massachusetts: MIT Press, Cambridge, MA.

Casado, A. (2009). Bioética para legos. Plaza y Valdés.

Casado, A. C. D. (2005). Thoreau : biografía esencial. Ediciones Acuarela.

Zissis, D., Lekkas, D., & Arnellos, A. (2012). A systems theory approach to electronic voting complexity. In A. Manoharan & M. Holzer (Eds.), Active Citizen Participation in E-Government: A Global Perspective (pp. 128–151). IGI Global. Retrieved from doi:10.4018/978-1-4666-0116-1.ch007

Moreno, A., Ruiz-Mirazo, K., & Barandiaran, X. E. (2011). The impact of the paradigm of complexity on the foundational frameworks of biology and cognitive science. In C. A. Hooker, D. V. Gabbay, P. Thagard, & J. Woods (Eds.), Handbook of the Philosophy of Science (Vols. 1-10, Vol. Philosophy of Complex Systems, pp. 311–333). Elsevier. (Download)

Casado, A. (2009). Stars and Triangles: Controversial Bioethics in Spanish Film. In Bioethics at the Movies (1st ed., pp. 328–344). The Johns Hopkins University Press.

Barandiaran, X. E. (2007). Mental Life: conceptual models and synthetic methodologies for a post-cognitivist psychology. In B. Wallace, A. Ross, J. Davies, & T. Anderson (Eds.), The World, the Mind and the Body: Psychology after cognitivism (pp. 49–90). Imprint Academic. (Download)

Brands, M., Arnellos, A., Spyrou, T., & Darzentas, J. (2007). A Biosemiotic Analysis of Serotonin’s Complex Functionality. In Biosemiotics in Transdisciplinary Contexts (pp. 125–132). Helsinki, Umweb.

Bich, L. (2006). Autopoiesis and Emergence. In G. Minati, E. Pessa, & M. Abram (Eds.), Systemics of Emergence: Research and Development (pp. 281–292). New York: Springer-Verlag. (Download)