Artikuluak aldizkarietan – Artikuluak Kongresuetan- Liburuak – Liburu Kapituluak
Artículos en Revistas
2013
Buhrmann, T., Di Paolo, E. A., & Barandiaran, X. E. (2013). A dynamical systems account of sensorimotor contingencies. Frontiers in Cognition, 4, 285. doi:10.3389/fpsyg.2013.00285
Barandiaran, X. E., & Egbert, M. D. (2013). Norm-Establishing and Norm-Following in Autonomous Agency. Artificial Life, 91(2), 1–24. doi:10.1162/ARTL_a_00094
Mavelli, F., & Ruiz-Mirazo, K. (2013). Theoretical conditions for the stationary reproduction of model protocells. Integrative Biology , 5 , 324–341. doi:10.1039/c2ib20222k
Aguilera, M., Bedia, M. G., Santos, B. A., & Barandiaran, X. E. (2013). The situated HKB model: how sensorimotor spatial coupling can alter oscillatory brain dynamics. Frontiers in Computational Neuroscience, 7. doi:10.3389/fncom.2013.00117
Aguilera, M., Morer, I., Barandiaran, X., & Bedia, M. (2013). Quantifying Political Self-Organization in Social Media. Fractal patterns in the Spanish 15M movement on Twitter. In Advances in Artificial Life, ECAL13 (pp. 395–402). MIT Press. doi:10.7551/978-0-262-31709-2-ch057
Borge-Holthoefer, J., Baños, R. A., González-Bailón, S., & Moreno, Y. (2013). Cascading behaviour in complex socio-technical networks. Journal of Complex Networks, cnt006. doi:10.1093/comnet/cnt006
Ruiz-Mirazo, K., & Moreno, A. (2013). Synthetic Biology: challenging life in order to grasp, use or extend it. Biological Theory (available on-line: July 2013). doi:10.1007/s13752-013-0129-8
2012
Santos, B., Barandiaran, X. E., Husbands, P., Aguilera, M., & Bedia, M. (2012). Sensorimotor coordination and metastability in a situated HKB model. Connection Science, 24(4), 143–161. doi:10.1080/09540091.2013.770821
Bich, L., & Damiano, L. (2012). Riscoprire la teoria dell’autopoiesi nella caratterizzazione dei sistemi sociali. In Sistemi, Modelli, Organizzazioni. Management e Complessità (pp. 83–110). Corisco.
Bich, L. (2012). Il concetto di “ milieu intérieur”: ruolo e implicazioni teoriche in un approccio sistemico allo studio del vivente. In Epistemologie in Dialogo? Contesti e costruzioni di conoscenze (pp. 179–210). Guaraldi. Retrieved from http://leonardobich.files.wordpress.com/2012/12/bich-il-concetto-di-milieu-interieur-ruolo-e-implicazioni-per-un-approccio-sistemico-allo-studio-del-vivente.pdf
Bich, L. (2012). L’ordine invisibile. Organizzazione, autonomia e complessità del vivente. Rubbettino.
Bich, L. (2012). Stability, regulation, and their role in minimal living systems. In A. Diéguez, V. Claramonte, J. Alcolea Banegas, G. Caponi, A. Etxeberría, P. Lorenzano, A. Marcos, J. Martínez Contreras, A. Rosas (eds.), I Congreso de la Asociación Iberoamericana de Filosofía de la Biología (AIFBI) (pp. 343–350). Universitat de Valencia.
Bich, L., & Arnellos, A. (2012). Autopoiesis, Autonomy, and Organizational Biology: Critical Remarks on Life After Ashby. Cybernetics & Human Knowing, 19(4), 75–103.
Bich, L., & Damiano, L. (2012). On the Emergence of Biology from Chemistry: A Discontinuist Perspective from the Point of View of Stability and Regulation. Origins of Life and Evolution of Biospheres, 42(5), 475–482. doi:10.1007/s11084-012-9310-5
Bich, L., & Damiano, L. (2012). Life, Autonomy and Cognition: An Organizational Approach to the Definition of the Universal Properties of Life. Origins of Life and Evolution of Biospheres, 42(5), 389–397. doi:10.1007/s11084-012-9300-7
Amilburu, A., Muro, E., & Martín, E. (2012). Crónica: II Taller en Filosofía de la Biología y de las Ciencias Cognitivas. Boletín de la SLMFCE, (56), 13–15.
Amilburu, A. (2012). Natural Kind Thinking in Philosophy of Science: a Meta-theoretical Analysis. In Proceedings of the VII Conference of the Spanish Society for Logic, Methodology and Philosophy of Science (pp. 340–342). Presented at the SLMFCE 2012, Santiago de Compostela.
Amilburu, A. (2012). Naturalising Kinds or Naturalised Kinds? In Proceedings of the 20th Anniversary Conference: The Answers of Philosophy (p. 8). Presented at the SIFA 2012, Alghero, Italy.
Piedrafita, G., Ruiz-Mirazo, K., Monnard, P.-A., Cornish-Bowden, A., & Montero, F. (2012). Viability conditions for a compartmentalized proto-metabolic system: a semi-empirical approach. . PLoS ONE, 7(6), e39480.
Bich, L., & Bocchi, G. (2012). Emergent processes as generation of discontinuities. In Methods, Models, Simulations And Approaches Towards A General Theory Of Change (pp. 135–146). WORLD SCIENTIFIC. Retrieved from http://www.worldscientific.com/doi/abs/10.1142/9789814383332_0009
Santos, B. A., Barandiaran, X. E., & Husbands, P. (2012). Synchrony and phase relation dynamics underlying sensorimotor coordination. Adaptive Behavior. doi:10.1177/1059712312451859
Arrieta-Valero, I. (2012). El compromiso ético de la medicina. A propósito de la obra de Alfred I. Tauber. Revista Internacional de Humanidades Médicas, 1, 1 – 8. Retrieved from http://humanidadesmedicas.com/files/2012/05/EL-COMPROMISO-%%C3%%89TICO-DE-LA-MEDICINA.pdf
Arrieta-Valero, I. (2012). La salud y la enfermedad [Review of GIROUX, E. (2011), Después de Canguilhem: definir la salud y la enfermedad, Bogota: Universidad El Bosque]. DILEMATA. International Journal of Applied Ethics, año 4 (2012), no 9, 259–265. Retrieved from http://www.dilemata.net/revista/index.php/dilemata/article/view/156/150
Bich, L. (2012). Complex emergence and the living organization: an epistemological framework for biology. Synthese, 185(2), 215–232. doi:10.1007/s11229-010-9722-6
Arnellos, A., & Moreno, A. (2012). How Functional Differentiation Originated in Prebiotic Evolution. Ludus Vitalis, XX(37), in press.
Zissis, D., Lekkas, D., & Arnellos, A. (2012). A systems theory approach to electronic voting complexity. In A. Manoharan & M. Holzer (Eds.), Active Citizen Participation in E-Government: A Global Perspective (pp. 128–151). IGI Global. Retrieved from doi:10.4018/978-1-4666-0116-1.ch007
Arnellos, A., Bruni, L., El-Hani, C. N., & Collier, J. (2012). Anticipatory Functions, Digital-Analog forms and Biosemiotics: Integrating the tools to model Information and Normativity in Autonomous Biological Agents. Biosemiotics, 5(3), forthcoming.
Xenakis, I., Arnellos, A., Spyrou, T., & Darzentas, J. (2012). Modelling the Aesthetic Judgement: an Interactive-semiotic Perspective. Cybernetics & Human Knowing, forthcoming.
Arrieta-Valero, I. (2012). El ejercicio razonable de la autonomía del paciente. DILEMATA. International Journal of Applied Ethics, año 4 (2012), no 8., 27–32. Retrieved from http://www.dilemata.net/revista/index.php/dilemata/article/view/111/113
Egbert, M. D., Barandiaran, X. E., & Di Paolo, E. A. (2012). Behavioral Metabolution: The Adaptive and Evolutionary Potential of Metabolism-Based Chemotaxis. Artificial Life, 18(1), 1–25. doi:10.1162/artl_a_00047
Rendón, A., Carton, D. G., Sot, J., García-Pacios, M., Montes, R., Valle, M., … Ruiz-Mirazo, K. (2012). Model Systems of Precursor Cellular Membranes: Long-Chain Alcohols Stabilize Spontaneously Formed Oleic Acid Vesicles. Biophysical Journal, 102(2), 278–286. doi:10.1016/j.bpj.2011.12.026
Barwich, A.-S., & Amilburu, A. (2012). Bridging Disciplines? An Enquiry on the Future of Natural Kinds in Philosophy and the Life Sciences. Biological Theory, 6(2), 187–190. Retrieved from http://link.springer.com/article/10.1007%%2Fs13752-012-0025-7
Xenakis, I., Arnellos, A., & Darzentas, J. (2012). The functional role of emotions in aesthetic judgment. New Ideas in Psychology, 30(2), 212–226. doi:10.1016/j.newideapsych.2011.09.003
Ruiz-Mirazo, K., & Moreno, A. (2012). Autonomy in evolution: from minimal to complex life. Synthese, 185(1), 21–52. doi:10.1007/s11229-011-9874-z
2011
Bich, L., & Mossio, M. (2011). On the Role of Constraints in the Emergence of Biological Organization. Logic and Philosophy of Science, IX(1), 381–388. Retrieved from http://www2.units.it/episteme/L&PS_Vol9No1/L&PS_Vol9No1_2011_34_Bich-Mossio.pdf
Ruiz-Mirazo, K. (2011). Protocell. In Encyclopedia of Astrobiology. Springer.
Ruiz-Mirazo, K., & Moreno, A. (2011). Life. In Encyclopedia of Astrobiology . Springer.
Vicente, A. (2011). Current Physics and “the Physical”. The British Journal for the Philosophy of Science, 62(2), 393–416. doi:10.1093/bjps/axq033
Arrieta-Valero, I. (2011). Deliberando en bioética: la gran suerte de contar con el cine [Review of MORATALLA, T. M., (2010), Bioética y cine. De la narración a la deliberación, Madrid: San Pablo]. DILEMATA. International Journal of Applied Ethics, año 2 (2011), no 6., 159–162. Retrieved from http://www.dilemata.net/revista/index.php/dilemata/article/view/97/101
Piedrafita, G., Mavelli, F., Morán, F., & Ruiz-Mirazo, K. (2011). On the Transition from Prebiotic to Proto-biological Membranes: From “Self-assembly”to “Self-production”. Advances in Artificial Life. Darwin Meets von Neumann, 256–264.
Ruiz-Mirazo, K., & Moreno, A. (2011). The Need for a Universal Definition of Life in Twenty-first-century Biology. Information and Living Systems: Philosophical and Scientific Perspectives, 1.
Moreno, A., & Ruiz-Mirazo, K. (2011). The Informational Nature of Biological Causality. Information and Living Systems: Philosophical and Scientific Perspectives, 157.
Ruiz-Mirazo, K., Piedrafita, G., Ciriaco, F., & Mavelli, F. (2011). Stochastic Simulations of Mixed-Lipid Compartments: From Self-Assembling Vesicles to Self-Producing Protocells. Software Tools and Algorithms for Biological Systems, 689–696.
Amilburu, A. (2011). An Organizational View of Biological Essences. In Proceedings of the ISHPSSB 2011 Conference (p. 52). Salt Lake City, Utah, USA.
Vicente, A., & Martinez Manrique, F. (2011). Inner Speech: Nature and Functions. Philosophy Compass, 6(3), 209–219. doi:10.1111/j.1747-9991.2010.00369.x
Arnellos, A., Lekkas, D., Zissis, D., Spyrou, T., & Darzentas, J. (2011). Fair digital signing: The structural reliability of signed documents. Computers & Security, 30(8), 580–596. doi:10.1016/j.cose.2011.09.001
Casado, A., & Moreno, A. (2011). Autonomy Beyond the Brain: What Neuroscience Offers to a More Interactive, Relational Bioethics. The American Journal of Bioethics – Neuroscience, 2(3), 54–56.
Bermejo-Luque, L., & Casado, Antonio. (2011). Bancos, bibliotecas y cementerios: usos de las analogías en el razonamiento sobre biotecnología. THEORIA. An International Journal for Theory, History and Foundations of Science, 26(71), 195–212.
Moreno, A., Ruiz-Mirazo, K., & Barandiaran, X. E. (2011). The impact of the paradigm of complexity on the foundational frameworks of biology and cognitive science. In C. A. Hooker, D. V. Gabbay, P. Thagard, & J. Woods (Eds.), Handbook of the Philosophy of Science (Vols. 1-10, Vol. Philosophy of Complex Systems, pp. 311–333). Elsevier.
Egbert, M. D., Barandiaran, X. E., & Di Paolo, E. A. (2011). Behavioral Metabolution: The Adaptive and Evolutionary Potential of Metabolism-Based Chemotaxis. Artificial Life, 18(1), 1–25. doi:10.1162/artl_a_00047
Santos, B., Barandiaran, X. E., & Husbands, P. (2011). Metastable dynamical regimes in oscillatory network modulated by an agent’s sensorimotor loop. In Proceedings of the IEEE Symposium Series on Computational Intelligence - SSCI 2011 (p. in press).
Aguilera, M., Bedia, M., Barandiaran, X. E., & Serón, O. (2011). The adjustment-deployment dilemma in organism’s behaviour: theoretical characterization and a model. In Proceedings of the IEEE Symposium Series on Computational Intelligence - SSCI 2011 (p. in press).
Egbert, M. D., & Barandiaran, X. E. (2011). Quantifying Normative Behaviour and Precariousness in Adaptive Agency. In T. Lenaerts, M. Giacobini, H. Bersini, P. Bourgine, M. Dorigo, & R. Doursat (Eds.), Proceedings of the 11th European Conference on Artificial Life (pp. 210–218). Presented at the ECAL, MIT Press.
Santos, B., Barandiaran, X. E., & Husbands, P. (2011). Neurodynamic regimes of phase relation and behavior in robotic models. BMC Neuroscience, 12(Suppl 1), P155.
Santos, B. A., Barandiaran, X. E., & Husbands, P. (2011). Metastable dynamical regimes in an oscillatory network modulated by an agent’s sensorimotor loop. In 2011 IEEE Symposium on Artificial Life (ALIFE) (pp. 124–131). Presented at the 2011 IEEE Symposium on Artificial Life (ALIFE), IEEE. doi:10.1109/ALIFE.2011.5954659
2010
Arrieta-Valero, I. (2010). ¿Es la autonomía personal el valor primordial de nuestras sociedades? biTARTE Revista de Humanidades, año 17 (agosto 2010), no 51., 5–28.
Arrieta-Valero, I., & Casado, A. (2010). La ética asistencial entre la autonomía y el paternalismo [Review of NYS, T., DENIER, Y., VANDEVELDE, T. (eds.) (2007), Autonomy and Paternalism. Reflections on the Theory and Practice of Health Care. Leuven: Peeters]. DILEMATA. International Journal of Applied Ethics, año 2 (2010), no 3., 135–137. Retrieved from http://www.dilemata.net/revista/index.php/dilemata/article/view/41/36
Saborido, C., Mossio, M., & Ruiz-Mirazo, K. (2010). In Search for Conceptual Bridges: A Review of “Functions in Biological and Artificial Worlds” Functions in Biological and Artificial Worlds. Comparative Philosophical Perspectives. U. Krohs and P. Kroes (Eds.). Vienna Series in Theoretical Biology.(2009, MIT Press.) 302 pages. Artificial Life, 16(4), 337–340.
Shirt-Ediss, B., Mavelli, F., & Ruiz-Mirazo, K. (2010). To Burst or Not To Burst: Osmotic Regulation in a Protocell Model Through Precursor Mechano-Sensitive Channels.
Piedrafita, G., Shirt-Ediss, B., Mavelli, F., Monnard, P. A., & Ruiz-Mirazo, K. (2010). “In Vitro”and “In Silico”Complementary Studies on the Physical Properties of Prebiotic Compartments.
Mavelli, F., & Ruiz-Mirazo, K. (2010). ENVIRONMENT: a computational platform to stochastically simulate reacting and self-reproducing lipid compartments. Physical biology, 7, 036002.
Ruiz-Mirazo, K., Peretó, J., & Moreno, A. (2010). Defining life or bringing biology to life. Origins of Life and Evolution of Biospheres, 40(2), 203–213.
Bich, L. (2010). Biological Autonomy and Systemic Integration. Origins of Life and Evolution of Biospheres, 40, 480–484.
Bich, L., Bocchi, G., & Damiano, L. (2010). An Epistemology of Contingency: Chance and Determinism at the Origin of Life. Origins of Life and Evolution of Biospheres, 40, 370–375.
Vicente, A. (2010). Clusters: On the Structure of Lexical Concepts. Dialectica, 64(1), 79–106. doi:10.1111/j.1746-8361.2010.01223.x
Bich, L. (2010). Complex emergence and the living organization: an epistemological framework for biology. Synthese. doi:10.1007/s11229-010-9722-6
Martínez-Manrique, F., & Vicente, A. (2010). What the…!’ The role of inner speech in conscious thought. Journal of Consciousness Studies, 17(9-10), 141–67.
Amilburu, A., & Etxeberria, A. (2010). Clasificaciones y géneros naturales: ¿estipulación o descubrimiento? In A. Jaume, M. Liz, D. Pérez Chico, M. Ponte, & M. Vazquez (Eds.), Proceedings of the sixth meeting of the Spanish Society for Analytic Philosophy. Presented at the SEFA VI, Tenerife.
Arnellos, A., Spyrou, T., & Darzentas, J. (2010). Towards the naturalization of agency based on an interactivist account of autonomy. New Ideas in Psychology, 28(3), 296–311. doi:10.1016/j.newideapsych.2009.09.005
Egbert, M. D., Barandiaran, X. E., & Di Paolo, E. A. (2010). Behavioral Metabolution: Metabolism based behavior enables new forms of adaptation and evolution. In Artificial Life XII: Proceedings of the Twelfth International Conference on the Simulation and Synthesis of Living Systems.
Egbert, M. D., Barandiaran, X. E., & Di Paolo, E. A. (2010). A Minimal Model of Metabolism-Based Chemotaxis. PLoS Comput Biol, 6(12), e1001004. doi:10.1371/journal.pcbi.1001004
2009
Vicente, A. (2009). Functions and emergence: when functional properties have something to say. Philosophical Studies, 152(2), 293–312. doi:10.1007/s11098-009-9477-4
Etxeberria, A., & Ruiz-Mirazo, K. (2009). The challenging biology of transients. EMBO reports, 10, S33–S36.
Moreno, A., & Ruiz-Mirazo, K. (2009). The problem of the emergence of functional diversity in prebiotic evolution. Biology & Philosophy, 24(5), 585–605. doi:10.1007/s10539-009-9178-6
Bich, L. (2009). Downward causation and relatedness in emergent systems: epistemological remarks (pp. 591–601). World Scientific Publishing Co. Pte. Ltd. doi:10.1142/9789812793478_0037
Casado, A. (2009). Stars and Triangles: Controversial Bioethics in Spanish Film. In Bioethics at the Movies (1st ed., pp. 328–344). The Johns Hopkins University Press.
Casado, A. (2009). Bioética para legos. Plaza y Valdés.
Egbert, M. D., Di Paolo, E., & Barandiaran, X. E. (2009). Chemo-ethology of a adaptive protocell: Sensor-less sensitivity to implicit viability conditions. In Proceedings of the Ninth European Conference on Artificial Life (pp. 242–249). Presented at the ECAL09, Budapest: Springer Verlag.
Barandiaran, X. E., & Chemero, A. (2009). Animats in the Modeling Ecosystem. Adaptive Behavior, 17(4), 287–292. doi:10.1177/1059712309340847
Barandiaran, X. E., Di Paolo, E., & Rohde, M. (2009). Defining Agency: Individuality, Normativity, Asymmetry, and Spatio-temporality in Action. Adaptive Behavior, 17(5), 367–386. doi:10.1177/1059712309343819
Umerez, J. (2009). Where does Pattee’s “how does a molecule become a message?” belong in the history of biosemiotics? Biosemiotics, 2(3), 269–290.
Moreno, A., & Ruiz-Mirazo, K. (2009). The problem of the emergence of functional diversity in prebiotic evolution. Biology and Philosophy, 24(5), 585–605.
2008
Arnellos, A., Spyrou, T., & Darzentas, J. (2008). Meaning Needs Functional Emergence: Shedding Novel Light onto Difficult Problems. Cybernetics & Human Knowing, 15(3-4), 50–56.
Neuman, Y., Arnellos, A., & Nave, O. (2008). Sign-Mediated Concept Formation. The American Journal of Semiotics, 24, 107–133. Retrieved from http://secure.pdcnet.org/pdc/bvdb.nsf/toc?openform&journal=pdc_ajs&yearrange=2001%%20-%%202011&category=0024_40911_2008#
Ruiz-Mirazo, K., & Mavelli, F. (2008). On the way towards “basic autonomous agents”: Stochastic simulations of minimal lipid-peptide cells. Biosystems, 91(2), 374–387.
Mavelli, F., Lerario, M., & Ruiz-Mirazo, K. (2008). ENVIRONMENT’: a stochastic simulation platform to study protocell dynamics. Proceedings of BIOCOMP, 2, 934–941.
Ruiz-Mirazo, K., Umerez, J., & Moreno, A. (2008). Enabling conditions for “open-ended evolution”. Biology and Philosophy, 23(1), 67–85.
Bich, L., & Damiano, L. (2008). Order in the Nothing: Autopoiesis and the Organizational Characterization of the Living. Electronic Journal of Theoretical Physics, 4(16), 343–373.
Vicente, A., & Martínez‐manrique, F. (2008). Thought, Language, and the Argument from Explicitness. Metaphilosophy, 39(3), 381–401. doi:10.1111/j.1467-9973.2008.00545.x
Arnellos, A., Spyrou, T., & Darzentas, J. (2008). Emergence and Downward Causation in Contemporary Artificial Agents: Implications for their Autonomy and Some Design Guidelines. Cybernetics & Human Knowing, 15(3-4), 15–41.
El-Hani, C. N., Arnellos, A., & Queiroza, J. (2008). Modeling a Semiotic Process in the Immune System: Signal Transduction in B-cells Activation. tripleC - Cognition, Communication, Co-operation, 5(2), 24–36. Retrieved from http://www.triple-c.at/index.php/tripleC/article/viewArticle/56
Amilburu, A. (2008). La masa sin cualidades. biTARTE, 45, 63–78.
Barandiaran, X. E., & Moreno, A. (2008). Adaptivity: From Metabolism to Behavior. Adaptive Behavior, 16(5), 325–344. doi:10.1177/1059712308093868
Barandiaran, X., E., & Moreno, A. (2008). On the nature of neural information: A critique of the received view 50 years later. Neurocomputing, 71(4-6), 681–692. doi:10.1016/j.neucom.2007.09.014
Barandiaran, X. E. (2008). Mental Life: a naturalized approach to the autonomy of cognitive agents. (PhD Thesis). University of the Basque Country (UPV-EHU), Donostia - San Sebastián, Gipuzkoa, Spain. Retrieved from http://xabier.barandiaran.net/2010/06/barandiaran_-_2008_-_phd_thesis.pdf
Barandiaran, X., E., & Ruiz-Mirazo, K. (2008). Modelling autonomy: Simulating the essence of life and cognition. Biosystems, 91(2), 295–304. doi:10.1016/j.biosystems.2007.07.001
Barandiaran, X. E., & Di Paolo, E. A. (2008). Artificial Mental Life. In S. Bullock, J. Noble, R. Watson, & M. Bedau (Eds.), Artificial Life XI: Proceedings of the Eleventh International Conference on the Simulation and Synthesis of Living Systems (p. 747). Cambridge, MA.: MIT Press.
Izquierdo, E., & Buhrmann, T. (2008). Analysis of a dynamical recurrent neural network evolved for two qualitatively different tasks: walking and chemotaxis. In S. Bullock, J. Noble, R. Watson, & M. Bedau (Eds.), Artificial Life XI: Proceedings of the Eleventh International Conference on the Simulation and Synthesis of Living Systems (pp. 257–264). MIT Press, Cambridge, MA. Retrieved from http://www.alifexi.org/papers/ALIFExi_pp257-264.pdf
Umerez, J. (2008). Book Review: A Key Conceptual Tool for ALifers. Artificial Life, 14(2), 235–238.
Moreno, A., Etxeberria, A., & Umerez, J. (2008). The autonomy of biological individuals and artificial models. BioSystems, 91(2), 309–319.
Ruiz-Mirazo, K., Umerez, J., & Moreno, A. (2008). Enabling conditions for “open-ended evolution.” Biology & Philosophy, 23(1), 67–85.
2007
Brands, M., Arnellos, A., Spyrou, T., & Darzentas, J. (2007). A Biosemiotic Analysis of Serotonin’s Complex Functionality. In Biosemiotics in Transdisciplinary Contexts (pp. 125–132). Helsinki, Umweb.
Mavelli, F., & Ruiz-Mirazo, K. (2007). Stochastic simulations of fatty-acid proto-cell models. Proceedings of SPIE, 6602, 66021B.
Ruiz-Mirazo, K., & Mavelli, F. (2007). Simulation model for functionalized vesicles: lipid-peptide integration in minimal protocells. Advances in Artificial Life, 32–41.
Mavelli, F., & Ruiz-Mirazo, K. (2007). Question 8: bridging the gap between in silico and in vitro approaches to minimal cells. Origins of Life and Evolution of Biospheres, 37(4), 455–458.
Ruiz-Mirazo, K., & Mavelli, F. (2007). Question 7: modelling minimal “lipid-peptide”cells. Origins of Life and Evolution of Biospheres, 37(4), 433–437.
Mavelli, F., & Ruiz-Mirazo, K. (2007). Stochastic simulations of minimal self-reproducing cellular systems. Philosophical Transactions of the Royal Society B: Biological Sciences, 362(1486), 1789.
Bich, L., & Damiano, L. (2007). Question 9: Theoretical and Artificial Construction of the Living: Redefining the Approach from an Autopoietic Point of View. Origins of Life and Evolution of Biospheres, 37(4-5), 459–464. doi:10.1007/s11084-007-9082-5
Arnellos, Spyrou, & Darzentas, J. (2007). Exploring Creativity in the Design Process: A Systems-Semiotic Perspective. Cybernetics & Human Knowing, 14(1), 37–64.
Arnellos, A., Spyrou, T., & Darzentas, J. (2007). Cybernetic embodiment and the role of autonomy in the design process. Kybernetes, 36(9/10), 1207–1224. doi:10.1108/03684920710827247
Ruiz-Mirazo, K., Umerez, J., & Moreno, A. (2007). Enabling conditions for “open-ended evolution”. Biology & Philosophy, 23(1), 67–85. doi:10.1007/s10539-007-9076-8
Barandiaran, X. E. (2007). Mental Life: conceptual models and synthetic methodologies for a post-cognitivist psychology. In B. Wallace, A. Ross, J. Davies, & T. Anderson (Eds.), The World, the Mind and the Body: Psychology after cognitivism (pp. 49–90). Imprint Academic.
Frenz, H., Lappe, M., Kolesnik, M., & Buhrmann, T. (2007). Estimation of travel distance from visual motion in virtual environments. ACM Trans. Appl. Percept., 4(1). doi:10.1145/1227134.1227137
Barandiaran, X. E. (2007). Mental Life: conceptual models and synthetic methodologies for a post-cognitivist psychology. In B. Wallace, A. Ross, J. Davies, & T. Anderson (Eds.), The World, the Mind and the Body: Psychology after cognitivism (pp. 49–90). Imprint Academic.
Siqueiros, J., & Umerez, J. (2007). Grasping the complexity of living systems through integrative levels and hierarchies. Worldviews, Science and Us: Philosophy and Complexity: University of Liverpool, UK, 11-14 September 2005, 250.
2006
Vicente, A. (2006). On the Causal Completeness of Physics. International Studies in the Philosophy of Science, 20(2), 149–171. doi:10.1080/02698590600814332
Ruiz-Mirazo, K., & Moreno, A. (2006). On the origins of information and its relevance for biological complexity. Biological Theory, 1(3), 227–229.
Ruiz-Mirazo, K., Stano, P., & Luisi, P. L. (2006). Lysozyme effect on oleic acid/oleate vesicles. Journal of Liposome Research, 16(2), 143–154.
Bich, L. (2006). Autopoiesis and Emergence. In G. Minati, E. Pessa, & M. Abram (Eds.), Systemics of Emergence: Research and Development (pp. 281–292). New York: Springer-Verlag.
Arnellos, A., Vosinakis, S., Spyrou, T., & Darzentas, J. (2006). The Emergence of Autonomous Representations in Artificial Agents. Journal of Computers, 1(6). doi:10.4304/jcp.1.6.29-36
Barandiaran, X. E., & Lluis, G. (2006). Autonomía, Comunicación y Evolución en redes bacterianas y tecnológicas. biTARTE, (38), 35–60.
Barandiaran, X. E., & Moreno, A. (2006). ALife Models as Epistemic Artefacts. In Artificial Life X : Proceedings of the Tenth International Conference on the Simulation and Synthesis of Living Systems (pp. 513–519). The MIT Press (Bradford Books).
Barandiaran, X. E., & Moreno, A. (2006). On What Makes Certain Dynamical Systems Cognitive: A Minimally Cognitive Organization Program. Adaptive Behavior, 14(2), 171–185. doi:10.1177/105971230601400208
Buhrmann, T., & Paolo, E. (2006). Biological Actuators Are Not Just Springs. In S. Nolfi, G. Baldassarre, R. Calabretta, J. C. T. Hallam, D. Marocco, J.-A. Meyer, … D. Parisi (Eds.), From Animals to Animats 9 (Vol. 4095, pp. 89–100). Berlin, Heidelberg: Springer Berlin Heidelberg. Retrieved from http://dblp.uni-trier.de/rec/bibtex/conf/sab/BuehrmannP06
Barandiaran, X. E., & Moreno, A. (2006). On What Makes Certain Dynamical Systems Cognitive: A Minimally Cognitive Organization Program. Adaptive Behavior, 14(2), 171–185. doi:10.1177/105971230601400208
Etxeberria, A., Umerez, J., & Ambrogi, A. (2006). Organismo y organización en la biología teórica?` Vuelta al organicismo 50 años después. Medio siglo de doble hélice. Palma de Mallorca, España: Edicions Universitat de les Illes Balears.
2005
Arnellos, A., Spyrou, T., & Darzentas, J. (2005). Dynamic Interactions in Artificial Environments: Causal and Non-Causal Aspects for the Emergence of Meaning. Systemics, Cybernetics and Informatics, 3(1), 82–89. Retrieved from http://www.iiisci.org/Journal/CV$/sci/pdfs/P416905.pdf
Vicente, A., & Martínez‐Manrique, F. (2005). Semantic Underdetermination and the Cognitive Uses of Language. Mind & Language, 20(5), 537–558. doi:10.1111/j.0268-1064.2005.00299.x
Vicente, A., & Martínez‐Manrique, F. (2005). Semantic Underdetermination and the Cognitive Uses of Language. Mind & Language, 20(5), 537–558. doi:10.1111/j.0268-1064.2005.00299.x
Lappe, M., Frenz, H., Buhrmann, T., & Kolesnik, M. (2005). Virtual odometry from visual flow. Proceedings of SPIE, 5666(1), 493. doi:doi:10.1117/12.610863
Umerez, J. (2005). Critical assessment of the impact of ELSI programs. Retrieved from http://ishpssb.org/wp-content/uploads/2012/06/viewabstract_018.html
2004
Velasco, C. A., Mohamad, Y., Gilman, A. S., Viorres, N., Vlachogiannis, E., Arnellos, A., & Darzentas, J. S. (2004). The need for user information and its relationship to device profiles. Universal Access in the Information Society, 3(1), 88–95. doi:10.1007/s10209-003-0075-5
Ruiz-Mirazo, K., & Moreno, A. (2004). Basic Autonomy as a Fundamental Step in the Synthesis of Life. Artificial Life, 10(3), 235–259. doi:10.1162/1064546041255584
Ruiz-Mirazo, K., Pereto, J., & Moreno, A. (2004). A universal definition of life: autonomy and open-ended evolution. Origins of Life and Evolution of the Biosphere, 34(3), 323–346.
Moreno, A., & Barandiaran, X. E. (2004). A naturalized account of the inside-outside dichotomy. PHILOSOPHICA, 73, 11–26.
Barandiaran, X. E. (2004). Behavioral Adaptive Autonomy. A milestone on the Alife route to AI? In J. Pollack, M. A. Bedau, P. Husbands, T. Ikegami, & R. A. Watson (Eds.), Artificial life IX: proceedings of the Ninth International Conference on the Simulation and Synthesis of Artificial Life (pp. 514–521). MIT Press.
Buhrmann, T., & Di Paolo, E. A. (2004). Closing the loop: Evolving a model-free visually guided robot arm. In Proceedings of the Ninth International Conference on the Simulation and Synthesis of Living Systems 9 (pp. 63–72). Presented at the Artificial Life IX, Boston, Massachusetts: MIT Press, Cambridge, MA.
2002
Moreno, A., & Ruiz-Mirazo, K. (2002). Key issues regarding the origin, nature, and evolution of complexity in nature: Information as a central concept to understand biological organization. Emergence, 4(1-2), 63–76.
2001
Ruiz-Mirazo, K. (2001). Condiciones físicas para la aparición de sistemas autónomos con capacidades evolutivas abiertas. Ph. D. Dissertation, University of the Basc Country, San Sebastián.
Barandiaran, X. E. (2001). Adaptive Behaviour, Autonomy and Value systems. Normative function in dynamical adaptive systems (MSc Thesis). University of Sussex, Brighton, UK. Retrieved from http://www.ehu.es/ias-research/doc/2002_ba_msth_fin.pdf
Mateus Rocha, L. (2001). The physics and evolution of symbols and codes: reflections on the work of Howard Pattee. Biosystems, 60(1), 1–4.
Umerez, J. (2001). Howard Pattee’s theoretical biology—a radical epistemological stance to approach life, evolution and complexity. Biosystems, 60(1), 159–177.
2000
Ruiz-Mirazo, K., Etxeberria, A., Moreno, A., & Ibáñez, J. (2000). Organisms and their place in biology. Theory in biosciences, 119(3), 209–233.
Ruiz-Mirazo, K., & Moreno, A. (2000). Searching for the roots of autonomy: The natural and artificial paradigms revisited. Communication and Cognition–Artificial Intelligence, 17(3-4), 209–228.
Moreno, A., & Umerez, J. (2000). Downward causation at the core of living organization. Downward causation: Minds, bodies and matter, 99–117.
1999
Bergareche, A. M., & Ruiz-Mirazo, K. (1999). Metabolism and the problem of its universalization. BioSystems, 49(1), 45–61.
Ruiz-Mirazo, K., Moreno, A., Morán, F., Peretó, J., & Merelo, J. (1999). Designing a Simulation Model of a Self-Maintaining Cellular System. Advances in Artificial Life, 379–388.
Theraulaz, G., & Bonabeau, E. (1999). A brief history of stigmergy. Artificial life, 5(2), 97–116.
1998
Ruiz-Mirazo, K., Moreno, A., & Morán, F. (1998). Merging the energetic and the relational-constructive logic of life. Proceedings of Artificial Life VI, 448–451.
Ruiz-Mirazo, K., & Moreno, A. (1998). Autonomy and emergence: how systems become agents through the generation of functional constraints. Acta Polytechnica Scandinavica, Ma91, 273–282.
Umerez, J. (1998). The evolution of the symbolic domain in living systems and artificial life. In Evolutionary Systems (pp. 377–396). Springer.
1997
Moreno, A., Umerez, J., & Ibañez, J. (1997). Cognition and life: The autonomy of cognition. Brain and Cognition, 34(1), 107–129.
1995
Umerez, J., & Moreno, A. (1995). Origin of life as the first MST—control hierarchies and Interlevel relation. World Futures: Journal of General Evolution, 45(1-4), 139–154.
Umerez, J. (1995). Semantic Closure: a guiding notion to ground Artificial Life. In Advances in artificial life (pp. 77–94). Springer.
1994
Umerez, J. (1994). Jerarquías Autónomas.-Un estudio sobre el origen y la naturaleza de los procesos de control y de formación de niveles en sistemas naturales complejos. Ph. D. Dissertation, University of the Basque Country.
Moreno, A., Etxeberria, A., & Umerez, J. (1994). Universality without matter. In Artificial Life IV (pp. 406–410).
Artículos en Actas de Congresos
2013
Buhrmann, T., Di Paolo, E. A., & Barandiaran, X. E. (2013). A dynamical systems account of sensorimotor contingencies. Frontiers in Cognition, 4, 285. doi:10.3389/fpsyg.2013.00285
Barandiaran, X. E., & Egbert, M. D. (2013). Norm-Establishing and Norm-Following in Autonomous Agency. Artificial Life, 91(2), 1–24. doi:10.1162/ARTL_a_00094
Mavelli, F., & Ruiz-Mirazo, K. (2013). Theoretical conditions for the stationary reproduction of model protocells. Integrative Biology , 5 , 324–341. doi:10.1039/c2ib20222k
Aguilera, M., Bedia, M. G., Santos, B. A., & Barandiaran, X. E. (2013). The situated HKB model: how sensorimotor spatial coupling can alter oscillatory brain dynamics. Frontiers in Computational Neuroscience, 7. doi:10.3389/fncom.2013.00117
Aguilera, M., Morer, I., Barandiaran, X., & Bedia, M. (2013). Quantifying Political Self-Organization in Social Media. Fractal patterns in the Spanish 15M movement on Twitter. In Advances in Artificial Life, ECAL13 (pp. 395–402). MIT Press. doi:10.7551/978-0-262-31709-2-ch057
Borge-Holthoefer, J., Baños, R. A., González-Bailón, S., & Moreno, Y. (2013). Cascading behaviour in complex socio-technical networks. Journal of Complex Networks, cnt006. doi:10.1093/comnet/cnt006
Ruiz-Mirazo, K., & Moreno, A. (2013). Synthetic Biology: challenging life in order to grasp, use or extend it. Biological Theory (available on-line: July 2013). doi:10.1007/s13752-013-0129-8
2012
Santos, B., Barandiaran, X. E., Husbands, P., Aguilera, M., & Bedia, M. (2012). Sensorimotor coordination and metastability in a situated HKB model. Connection Science, 24(4), 143–161. doi:10.1080/09540091.2013.770821
Bich, L., & Damiano, L. (2012). Riscoprire la teoria dell’autopoiesi nella caratterizzazione dei sistemi sociali. In Sistemi, Modelli, Organizzazioni. Management e Complessità (pp. 83–110). Corisco.
Bich, L. (2012). Il concetto di “ milieu intérieur”: ruolo e implicazioni teoriche in un approccio sistemico allo studio del vivente. In Epistemologie in Dialogo? Contesti e costruzioni di conoscenze (pp. 179–210). Guaraldi. Retrieved from http://leonardobich.files.wordpress.com/2012/12/bich-il-concetto-di-milieu-interieur-ruolo-e-implicazioni-per-un-approccio-sistemico-allo-studio-del-vivente.pdf
Bich, L. (2012). L’ordine invisibile. Organizzazione, autonomia e complessità del vivente. Rubbettino.
Bich, L. (2012). Stability, regulation, and their role in minimal living systems. In A. Diéguez, V. Claramonte, J. Alcolea Banegas, G. Caponi, A. Etxeberría, P. Lorenzano, A. Marcos, J. Martínez Contreras, A. Rosas (eds.), I Congreso de la Asociación Iberoamericana de Filosofía de la Biología (AIFBI) (pp. 343–350). Universitat de Valencia.
Bich, L., & Arnellos, A. (2012). Autopoiesis, Autonomy, and Organizational Biology: Critical Remarks on Life After Ashby. Cybernetics & Human Knowing, 19(4), 75–103.
Bich, L., & Damiano, L. (2012). On the Emergence of Biology from Chemistry: A Discontinuist Perspective from the Point of View of Stability and Regulation. Origins of Life and Evolution of Biospheres, 42(5), 475–482. doi:10.1007/s11084-012-9310-5
Bich, L., & Damiano, L. (2012). Life, Autonomy and Cognition: An Organizational Approach to the Definition of the Universal Properties of Life. Origins of Life and Evolution of Biospheres, 42(5), 389–397. doi:10.1007/s11084-012-9300-7
Amilburu, A., Muro, E., & Martín, E. (2012). Crónica: II Taller en Filosofía de la Biología y de las Ciencias Cognitivas. Boletín de la SLMFCE, (56), 13–15.
Amilburu, A. (2012). Natural Kind Thinking in Philosophy of Science: a Meta-theoretical Analysis. In Proceedings of the VII Conference of the Spanish Society for Logic, Methodology and Philosophy of Science (pp. 340–342). Presented at the SLMFCE 2012, Santiago de Compostela.
Amilburu, A. (2012). Naturalising Kinds or Naturalised Kinds? In Proceedings of the 20th Anniversary Conference: The Answers of Philosophy (p. 8). Presented at the SIFA 2012, Alghero, Italy.
Piedrafita, G., Ruiz-Mirazo, K., Monnard, P.-A., Cornish-Bowden, A., & Montero, F. (2012). Viability conditions for a compartmentalized proto-metabolic system: a semi-empirical approach. . PLoS ONE, 7(6), e39480.
Bich, L., & Bocchi, G. (2012). Emergent processes as generation of discontinuities. In Methods, Models, Simulations And Approaches Towards A General Theory Of Change (pp. 135–146). WORLD SCIENTIFIC. Retrieved from http://www.worldscientific.com/doi/abs/10.1142/9789814383332_0009
Santos, B. A., Barandiaran, X. E., & Husbands, P. (2012). Synchrony and phase relation dynamics underlying sensorimotor coordination. Adaptive Behavior. doi:10.1177/1059712312451859
Arrieta-Valero, I. (2012). El compromiso ético de la medicina. A propósito de la obra de Alfred I. Tauber. Revista Internacional de Humanidades Médicas, 1, 1 – 8. Retrieved from http://humanidadesmedicas.com/files/2012/05/EL-COMPROMISO-%%C3%%89TICO-DE-LA-MEDICINA.pdf
Arrieta-Valero, I. (2012). La salud y la enfermedad [Review of GIROUX, E. (2011), Después de Canguilhem: definir la salud y la enfermedad, Bogota: Universidad El Bosque]. DILEMATA. International Journal of Applied Ethics, año 4 (2012), no 9, 259–265. Retrieved from http://www.dilemata.net/revista/index.php/dilemata/article/view/156/150
Bich, L. (2012). Complex emergence and the living organization: an epistemological framework for biology. Synthese, 185(2), 215–232. doi:10.1007/s11229-010-9722-6
Arnellos, A., & Moreno, A. (2012). How Functional Differentiation Originated in Prebiotic Evolution. Ludus Vitalis, XX(37), in press.
Zissis, D., Lekkas, D., & Arnellos, A. (2012). A systems theory approach to electronic voting complexity. In A. Manoharan & M. Holzer (Eds.), Active Citizen Participation in E-Government: A Global Perspective (pp. 128–151). IGI Global. Retrieved from doi:10.4018/978-1-4666-0116-1.ch007
Arnellos, A., Bruni, L., El-Hani, C. N., & Collier, J. (2012). Anticipatory Functions, Digital-Analog forms and Biosemiotics: Integrating the tools to model Information and Normativity in Autonomous Biological Agents. Biosemiotics, 5(3), forthcoming.
Xenakis, I., Arnellos, A., Spyrou, T., & Darzentas, J. (2012). Modelling the Aesthetic Judgement: an Interactive-semiotic Perspective. Cybernetics & Human Knowing, forthcoming.
Arrieta-Valero, I. (2012). El ejercicio razonable de la autonomía del paciente. DILEMATA. International Journal of Applied Ethics, año 4 (2012), no 8., 27–32. Retrieved from http://www.dilemata.net/revista/index.php/dilemata/article/view/111/113
Egbert, M. D., Barandiaran, X. E., & Di Paolo, E. A. (2012). Behavioral Metabolution: The Adaptive and Evolutionary Potential of Metabolism-Based Chemotaxis. Artificial Life, 18(1), 1–25. doi:10.1162/artl_a_00047
Rendón, A., Carton, D. G., Sot, J., García-Pacios, M., Montes, R., Valle, M., … Ruiz-Mirazo, K. (2012). Model Systems of Precursor Cellular Membranes: Long-Chain Alcohols Stabilize Spontaneously Formed Oleic Acid Vesicles. Biophysical Journal, 102(2), 278–286. doi:10.1016/j.bpj.2011.12.026
Barwich, A.-S., & Amilburu, A. (2012). Bridging Disciplines? An Enquiry on the Future of Natural Kinds in Philosophy and the Life Sciences. Biological Theory, 6(2), 187–190. Retrieved from http://link.springer.com/article/10.1007%%2Fs13752-012-0025-7
Xenakis, I., Arnellos, A., & Darzentas, J. (2012). The functional role of emotions in aesthetic judgment. New Ideas in Psychology, 30(2), 212–226. doi:10.1016/j.newideapsych.2011.09.003
Ruiz-Mirazo, K., & Moreno, A. (2012). Autonomy in evolution: from minimal to complex life. Synthese, 185(1), 21–52. doi:10.1007/s11229-011-9874-z
2011
Bich, L., & Mossio, M. (2011). On the Role of Constraints in the Emergence of Biological Organization. Logic and Philosophy of Science, IX(1), 381–388. Retrieved from http://www2.units.it/episteme/L&PS_Vol9No1/L&PS_Vol9No1_2011_34_Bich-Mossio.pdf
Ruiz-Mirazo, K. (2011). Protocell. In Encyclopedia of Astrobiology. Springer.
Ruiz-Mirazo, K., & Moreno, A. (2011). Life. In Encyclopedia of Astrobiology . Springer.
Vicente, A. (2011). Current Physics and “the Physical”. The British Journal for the Philosophy of Science, 62(2), 393–416. doi:10.1093/bjps/axq033
Arrieta-Valero, I. (2011). Deliberando en bioética: la gran suerte de contar con el cine [Review of MORATALLA, T. M., (2010), Bioética y cine. De la narración a la deliberación, Madrid: San Pablo]. DILEMATA. International Journal of Applied Ethics, año 2 (2011), no 6., 159–162. Retrieved from http://www.dilemata.net/revista/index.php/dilemata/article/view/97/101
Piedrafita, G., Mavelli, F., Morán, F., & Ruiz-Mirazo, K. (2011). On the Transition from Prebiotic to Proto-biological Membranes: From “Self-assembly”to “Self-production”. Advances in Artificial Life. Darwin Meets von Neumann, 256–264.
Ruiz-Mirazo, K., & Moreno, A. (2011). The Need for a Universal Definition of Life in Twenty-first-century Biology. Information and Living Systems: Philosophical and Scientific Perspectives, 1.
Moreno, A., & Ruiz-Mirazo, K. (2011). The Informational Nature of Biological Causality. Information and Living Systems: Philosophical and Scientific Perspectives, 157.
Ruiz-Mirazo, K., Piedrafita, G., Ciriaco, F., & Mavelli, F. (2011). Stochastic Simulations of Mixed-Lipid Compartments: From Self-Assembling Vesicles to Self-Producing Protocells. Software Tools and Algorithms for Biological Systems, 689–696.
Amilburu, A. (2011). An Organizational View of Biological Essences. In Proceedings of the ISHPSSB 2011 Conference (p. 52). Salt Lake City, Utah, USA.
Vicente, A., & Martinez Manrique, F. (2011). Inner Speech: Nature and Functions. Philosophy Compass, 6(3), 209–219. doi:10.1111/j.1747-9991.2010.00369.x
Arnellos, A., Lekkas, D., Zissis, D., Spyrou, T., & Darzentas, J. (2011). Fair digital signing: The structural reliability of signed documents. Computers & Security, 30(8), 580–596. doi:10.1016/j.cose.2011.09.001
Casado, A., & Moreno, A. (2011). Autonomy Beyond the Brain: What Neuroscience Offers to a More Interactive, Relational Bioethics. The American Journal of Bioethics – Neuroscience, 2(3), 54–56.
Bermejo-Luque, L., & Casado, Antonio. (2011). Bancos, bibliotecas y cementerios: usos de las analogías en el razonamiento sobre biotecnología. THEORIA. An International Journal for Theory, History and Foundations of Science, 26(71), 195–212.
Moreno, A., Ruiz-Mirazo, K., & Barandiaran, X. E. (2011). The impact of the paradigm of complexity on the foundational frameworks of biology and cognitive science. In C. A. Hooker, D. V. Gabbay, P. Thagard, & J. Woods (Eds.), Handbook of the Philosophy of Science (Vols. 1-10, Vol. Philosophy of Complex Systems, pp. 311–333). Elsevier.
Egbert, M. D., Barandiaran, X. E., & Di Paolo, E. A. (2011). Behavioral Metabolution: The Adaptive and Evolutionary Potential of Metabolism-Based Chemotaxis. Artificial Life, 18(1), 1–25. doi:10.1162/artl_a_00047
Santos, B., Barandiaran, X. E., & Husbands, P. (2011). Metastable dynamical regimes in oscillatory network modulated by an agent’s sensorimotor loop. In Proceedings of the IEEE Symposium Series on Computational Intelligence - SSCI 2011 (p. in press).
Aguilera, M., Bedia, M., Barandiaran, X. E., & Serón, O. (2011). The adjustment-deployment dilemma in organism’s behaviour: theoretical characterization and a model. In Proceedings of the IEEE Symposium Series on Computational Intelligence - SSCI 2011 (p. in press).
Egbert, M. D., & Barandiaran, X. E. (2011). Quantifying Normative Behaviour and Precariousness in Adaptive Agency. In T. Lenaerts, M. Giacobini, H. Bersini, P. Bourgine, M. Dorigo, & R. Doursat (Eds.), Proceedings of the 11th European Conference on Artificial Life (pp. 210–218). Presented at the ECAL, MIT Press.
Santos, B., Barandiaran, X. E., & Husbands, P. (2011). Neurodynamic regimes of phase relation and behavior in robotic models. BMC Neuroscience, 12(Suppl 1), P155.
Santos, B. A., Barandiaran, X. E., & Husbands, P. (2011). Metastable dynamical regimes in an oscillatory network modulated by an agent’s sensorimotor loop. In 2011 IEEE Symposium on Artificial Life (ALIFE) (pp. 124–131). Presented at the 2011 IEEE Symposium on Artificial Life (ALIFE), IEEE. doi:10.1109/ALIFE.2011.5954659
2010
Arrieta-Valero, I. (2010). ¿Es la autonomía personal el valor primordial de nuestras sociedades? biTARTE Revista de Humanidades, año 17 (agosto 2010), no 51., 5–28.
Arrieta-Valero, I., & Casado, A. (2010). La ética asistencial entre la autonomía y el paternalismo [Review of NYS, T., DENIER, Y., VANDEVELDE, T. (eds.) (2007), Autonomy and Paternalism. Reflections on the Theory and Practice of Health Care. Leuven: Peeters]. DILEMATA. International Journal of Applied Ethics, año 2 (2010), no 3., 135–137. Retrieved from http://www.dilemata.net/revista/index.php/dilemata/article/view/41/36
Saborido, C., Mossio, M., & Ruiz-Mirazo, K. (2010). In Search for Conceptual Bridges: A Review of “Functions in Biological and Artificial Worlds” Functions in Biological and Artificial Worlds. Comparative Philosophical Perspectives. U. Krohs and P. Kroes (Eds.). Vienna Series in Theoretical Biology.(2009, MIT Press.) 302 pages. Artificial Life, 16(4), 337–340.
Shirt-Ediss, B., Mavelli, F., & Ruiz-Mirazo, K. (2010). To Burst or Not To Burst: Osmotic Regulation in a Protocell Model Through Precursor Mechano-Sensitive Channels.
Piedrafita, G., Shirt-Ediss, B., Mavelli, F., Monnard, P. A., & Ruiz-Mirazo, K. (2010). “In Vitro”and “In Silico”Complementary Studies on the Physical Properties of Prebiotic Compartments.
Mavelli, F., & Ruiz-Mirazo, K. (2010). ENVIRONMENT: a computational platform to stochastically simulate reacting and self-reproducing lipid compartments. Physical biology, 7, 036002.
Ruiz-Mirazo, K., Peretó, J., & Moreno, A. (2010). Defining life or bringing biology to life. Origins of Life and Evolution of Biospheres, 40(2), 203–213.
Bich, L. (2010). Biological Autonomy and Systemic Integration. Origins of Life and Evolution of Biospheres, 40, 480–484.
Bich, L., Bocchi, G., & Damiano, L. (2010). An Epistemology of Contingency: Chance and Determinism at the Origin of Life. Origins of Life and Evolution of Biospheres, 40, 370–375.
Vicente, A. (2010). Clusters: On the Structure of Lexical Concepts. Dialectica, 64(1), 79–106. doi:10.1111/j.1746-8361.2010.01223.x
Bich, L. (2010). Complex emergence and the living organization: an epistemological framework for biology. Synthese. doi:10.1007/s11229-010-9722-6
Martínez-Manrique, F., & Vicente, A. (2010). What the…!’ The role of inner speech in conscious thought. Journal of Consciousness Studies, 17(9-10), 141–67.
Amilburu, A., & Etxeberria, A. (2010). Clasificaciones y géneros naturales: ¿estipulación o descubrimiento? In A. Jaume, M. Liz, D. Pérez Chico, M. Ponte, & M. Vazquez (Eds.), Proceedings of the sixth meeting of the Spanish Society for Analytic Philosophy. Presented at the SEFA VI, Tenerife.
Arnellos, A., Spyrou, T., & Darzentas, J. (2010). Towards the naturalization of agency based on an interactivist account of autonomy. New Ideas in Psychology, 28(3), 296–311. doi:10.1016/j.newideapsych.2009.09.005
Egbert, M. D., Barandiaran, X. E., & Di Paolo, E. A. (2010). Behavioral Metabolution: Metabolism based behavior enables new forms of adaptation and evolution. In Artificial Life XII: Proceedings of the Twelfth International Conference on the Simulation and Synthesis of Living Systems.
Egbert, M. D., Barandiaran, X. E., & Di Paolo, E. A. (2010). A Minimal Model of Metabolism-Based Chemotaxis. PLoS Comput Biol, 6(12), e1001004. doi:10.1371/journal.pcbi.1001004
2009
Vicente, A. (2009). Functions and emergence: when functional properties have something to say. Philosophical Studies, 152(2), 293–312. doi:10.1007/s11098-009-9477-4
Etxeberria, A., & Ruiz-Mirazo, K. (2009). The challenging biology of transients. EMBO reports, 10, S33–S36.
Moreno, A., & Ruiz-Mirazo, K. (2009). The problem of the emergence of functional diversity in prebiotic evolution. Biology & Philosophy, 24(5), 585–605. doi:10.1007/s10539-009-9178-6
Bich, L. (2009). Downward causation and relatedness in emergent systems: epistemological remarks (pp. 591–601). World Scientific Publishing Co. Pte. Ltd. doi:10.1142/9789812793478_0037
Casado, A. (2009). Stars and Triangles: Controversial Bioethics in Spanish Film. In Bioethics at the Movies (1st ed., pp. 328–344). The Johns Hopkins University Press.
Casado, A. (2009). Bioética para legos. Plaza y Valdés.
Egbert, M. D., Di Paolo, E., & Barandiaran, X. E. (2009). Chemo-ethology of a adaptive protocell: Sensor-less sensitivity to implicit viability conditions. In Proceedings of the Ninth European Conference on Artificial Life (pp. 242–249). Presented at the ECAL09, Budapest: Springer Verlag.
Barandiaran, X. E., & Chemero, A. (2009). Animats in the Modeling Ecosystem. Adaptive Behavior, 17(4), 287–292. doi:10.1177/1059712309340847
Barandiaran, X. E., Di Paolo, E., & Rohde, M. (2009). Defining Agency: Individuality, Normativity, Asymmetry, and Spatio-temporality in Action. Adaptive Behavior, 17(5), 367–386. doi:10.1177/1059712309343819
Umerez, J. (2009). Where does Pattee’s “how does a molecule become a message?” belong in the history of biosemiotics? Biosemiotics, 2(3), 269–290.
2008
Arnellos, A., Spyrou, T., & Darzentas, J. (2008). Meaning Needs Functional Emergence: Shedding Novel Light onto Difficult Problems. Cybernetics & Human Knowing, 15(3-4), 50–56.
Neuman, Y., Arnellos, A., & Nave, O. (2008). Sign-Mediated Concept Formation. The American Journal of Semiotics, 24, 107–133. Retrieved from http://secure.pdcnet.org/pdc/bvdb.nsf/toc?openform&journal=pdc_ajs&yearrange=2001%%20-%%202011&category=0024_40911_2008#
Ruiz-Mirazo, K., & Mavelli, F. (2008). On the way towards “basic autonomous agents”: Stochastic simulations of minimal lipid-peptide cells. Biosystems, 91(2), 374–387.
Mavelli, F., Lerario, M., & Ruiz-Mirazo, K. (2008). ENVIRONMENT’: a stochastic simulation platform to study protocell dynamics. Proceedings of BIOCOMP, 2, 934–941.
Ruiz-Mirazo, K., Umerez, J., & Moreno, A. (2008). Enabling conditions for “open-ended evolution”. Biology and Philosophy, 23(1), 67–85.
Bich, L., & Damiano, L. (2008). Order in the Nothing: Autopoiesis and the Organizational Characterization of the Living. Electronic Journal of Theoretical Physics, 4(16), 343–373.
Vicente, A., & Martínez‐manrique, F. (2008). Thought, Language, and the Argument from Explicitness. Metaphilosophy, 39(3), 381–401. doi:10.1111/j.1467-9973.2008.00545.x
Arnellos, A., Spyrou, T., & Darzentas, J. (2008). Emergence and Downward Causation in Contemporary Artificial Agents: Implications for their Autonomy and Some Design Guidelines. Cybernetics & Human Knowing, 15(3-4), 15–41.
El-Hani, C. N., Arnellos, A., & Queiroza, J. (2008). Modeling a Semiotic Process in the Immune System: Signal Transduction in B-cells Activation. tripleC - Cognition, Communication, Co-operation, 5(2), 24–36. Retrieved from http://www.triple-c.at/index.php/tripleC/article/viewArticle/56
Amilburu, A. (2008). La masa sin cualidades. biTARTE, 45, 63–78.
Barandiaran, X. E., & Moreno, A. (2008). Adaptivity: From Metabolism to Behavior. Adaptive Behavior, 16(5), 325–344. doi:10.1177/1059712308093868
Barandiaran, X., E., & Moreno, A. (2008). On the nature of neural information: A critique of the received view 50 years later. Neurocomputing, 71(4-6), 681–692. doi:10.1016/j.neucom.2007.09.014
Barandiaran, X. E. (2008). Mental Life: a naturalized approach to the autonomy of cognitive agents. (PhD Thesis). University of the Basque Country (UPV-EHU), Donostia - San Sebastián, Gipuzkoa, Spain. Retrieved from http://xabier.barandiaran.net/2010/06/barandiaran_-_2008_-_phd_thesis.pdf
Barandiaran, X., E., & Ruiz-Mirazo, K. (2008). Modelling autonomy: Simulating the essence of life and cognition. Biosystems, 91(2), 295–304. doi:10.1016/j.biosystems.2007.07.001
Barandiaran, X. E., & Di Paolo, E. A. (2008). Artificial Mental Life. In S. Bullock, J. Noble, R. Watson, & M. Bedau (Eds.), Artificial Life XI: Proceedings of the Eleventh International Conference on the Simulation and Synthesis of Living Systems (p. 747). Cambridge, MA.: MIT Press.
Izquierdo, E., & Buhrmann, T. (2008). Analysis of a dynamical recurrent neural network evolved for two qualitatively different tasks: walking and chemotaxis. In S. Bullock, J. Noble, R. Watson, & M. Bedau (Eds.), Artificial Life XI: Proceedings of the Eleventh International Conference on the Simulation and Synthesis of Living Systems (pp. 257–264). MIT Press, Cambridge, MA. Retrieved from http://www.alifexi.org/papers/ALIFExi_pp257-264.pdf
Umerez, J. (2008). Book Review: A Key Conceptual Tool for ALifers. Artificial Life, 14(2), 235–238.
Moreno, A., Etxeberria, A., & Umerez, J. (2008). The autonomy of biological individuals and artificial models. BioSystems, 91(2), 309–319.
Ruiz-Mirazo, K., Umerez, J., & Moreno, A. (2008). Enabling conditions for “open-ended evolution.” Biology & Philosophy, 23(1), 67–85.
2007
Brands, M., Arnellos, A., Spyrou, T., & Darzentas, J. (2007). A Biosemiotic Analysis of Serotonin’s Complex Functionality. In Biosemiotics in Transdisciplinary Contexts (pp. 125–132). Helsinki, Umweb.
Mavelli, F., & Ruiz-Mirazo, K. (2007). Stochastic simulations of fatty-acid proto-cell models. Proceedings of SPIE, 6602, 66021B.
Ruiz-Mirazo, K., & Mavelli, F. (2007). Simulation model for functionalized vesicles: lipid-peptide integration in minimal protocells. Advances in Artificial Life, 32–41.
Mavelli, F., & Ruiz-Mirazo, K. (2007). Question 8: bridging the gap between in silico and in vitro approaches to minimal cells. Origins of Life and Evolution of Biospheres, 37(4), 455–458.
Ruiz-Mirazo, K., & Mavelli, F. (2007). Question 7: modelling minimal “lipid-peptide”cells. Origins of Life and Evolution of Biospheres, 37(4), 433–437.
Mavelli, F., & Ruiz-Mirazo, K. (2007). Stochastic simulations of minimal self-reproducing cellular systems. Philosophical Transactions of the Royal Society B: Biological Sciences, 362(1486), 1789.
Bich, L., & Damiano, L. (2007). Question 9: Theoretical and Artificial Construction of the Living: Redefining the Approach from an Autopoietic Point of View. Origins of Life and Evolution of Biospheres, 37(4-5), 459–464. doi:10.1007/s11084-007-9082-5
Arnellos, Spyrou, & Darzentas, J. (2007). Exploring Creativity in the Design Process: A Systems-Semiotic Perspective. Cybernetics & Human Knowing, 14(1), 37–64.
Arnellos, A., Spyrou, T., & Darzentas, J. (2007). Cybernetic embodiment and the role of autonomy in the design process. Kybernetes, 36(9/10), 1207–1224. doi:10.1108/03684920710827247
Ruiz-Mirazo, K., Umerez, J., & Moreno, A. (2007). Enabling conditions for “open-ended evolution”. Biology & Philosophy, 23(1), 67–85. doi:10.1007/s10539-007-9076-8
Barandiaran, X. E. (2007). Mental Life: conceptual models and synthetic methodologies for a post-cognitivist psychology. In B. Wallace, A. Ross, J. Davies, & T. Anderson (Eds.), The World, the Mind and the Body: Psychology after cognitivism (pp. 49–90). Imprint Academic.
Frenz, H., Lappe, M., Kolesnik, M., & Buhrmann, T. (2007). Estimation of travel distance from visual motion in virtual environments. ACM Trans. Appl. Percept., 4(1). doi:10.1145/1227134.1227137
Barandiaran, X. E. (2007). Mental Life: conceptual models and synthetic methodologies for a post-cognitivist psychology. In B. Wallace, A. Ross, J. Davies, & T. Anderson (Eds.), The World, the Mind and the Body: Psychology after cognitivism (pp. 49–90). Imprint Academic.
Siqueiros, J., & Umerez, J. (2007). Grasping the complexity of living systems through integrative levels and hierarchies. Worldviews, Science and Us: Philosophy and Complexity: University of Liverpool, UK, 11-14 September 2005, 250.
2006
Vicente, A. (2006). On the Causal Completeness of Physics. International Studies in the Philosophy of Science, 20(2), 149–171. doi:10.1080/02698590600814332
Ruiz-Mirazo, K., & Moreno, A. (2006). On the origins of information and its relevance for biological complexity. Biological Theory, 1(3), 227–229.
Ruiz-Mirazo, K., Stano, P., & Luisi, P. L. (2006). Lysozyme effect on oleic acid/oleate vesicles. Journal of Liposome Research, 16(2), 143–154.
Bich, L. (2006). Autopoiesis and Emergence. In G. Minati, E. Pessa, & M. Abram (Eds.), Systemics of Emergence: Research and Development (pp. 281–292). New York: Springer-Verlag.
Arnellos, A., Vosinakis, S., Spyrou, T., & Darzentas, J. (2006). The Emergence of Autonomous Representations in Artificial Agents. Journal of Computers, 1(6). doi:10.4304/jcp.1.6.29-36
Barandiaran, X. E., & Lluis, G. (2006). Autonomía, Comunicación y Evolución en redes bacterianas y tecnológicas. biTARTE, (38), 35–60.
Barandiaran, X. E., & Moreno, A. (2006). ALife Models as Epistemic Artefacts. In Artificial Life X : Proceedings of the Tenth International Conference on the Simulation and Synthesis of Living Systems (pp. 513–519). The MIT Press (Bradford Books).
Barandiaran, X. E., & Moreno, A. (2006). On What Makes Certain Dynamical Systems Cognitive: A Minimally Cognitive Organization Program. Adaptive Behavior, 14(2), 171–185. doi:10.1177/105971230601400208
Buhrmann, T., & Paolo, E. (2006). Biological Actuators Are Not Just Springs. In S. Nolfi, G. Baldassarre, R. Calabretta, J. C. T. Hallam, D. Marocco, J.-A. Meyer, … D. Parisi (Eds.), From Animals to Animats 9 (Vol. 4095, pp. 89–100). Berlin, Heidelberg: Springer Berlin Heidelberg. Retrieved from http://dblp.uni-trier.de/rec/bibtex/conf/sab/BuehrmannP06
Barandiaran, X. E., & Moreno, A. (2006). On What Makes Certain Dynamical Systems Cognitive: A Minimally Cognitive Organization Program. Adaptive Behavior, 14(2), 171–185. doi:10.1177/105971230601400208
Etxeberria, A., Umerez, J., & Ambrogi, A. (2006). Organismo y organización en la biología teórica?` Vuelta al organicismo 50 años después. Medio siglo de doble hélice. Palma de Mallorca, España: Edicions Universitat de les Illes Balears.
2005
Arnellos, A., Spyrou, T., & Darzentas, J. (2005). Dynamic Interactions in Artificial Environments: Causal and Non-Causal Aspects for the Emergence of Meaning. Systemics, Cybernetics and Informatics, 3(1), 82–89. Retrieved from http://www.iiisci.org/Journal/CV$/sci/pdfs/P416905.pdf
Vicente, A., & Martínez‐Manrique, F. (2005). Semantic Underdetermination and the Cognitive Uses of Language. Mind & Language, 20(5), 537–558. doi:10.1111/j.0268-1064.2005.00299.x
Vicente, A., & Martínez‐Manrique, F. (2005). Semantic Underdetermination and the Cognitive Uses of Language. Mind & Language, 20(5), 537–558. doi:10.1111/j.0268-1064.2005.00299.x
Lappe, M., Frenz, H., Buhrmann, T., & Kolesnik, M. (2005). Virtual odometry from visual flow. Proceedings of SPIE, 5666(1), 493. doi:doi:10.1117/12.610863
Umerez, J. (2005). Critical assessment of the impact of ELSI programs. Retrieved from http://ishpssb.org/wp-content/uploads/2012/06/viewabstract_018.html
2004
Velasco, C. A., Mohamad, Y., Gilman, A. S., Viorres, N., Vlachogiannis, E., Arnellos, A., & Darzentas, J. S. (2004). The need for user information and its relationship to device profiles. Universal Access in the Information Society, 3(1), 88–95. doi:10.1007/s10209-003-0075-5
Ruiz-Mirazo, K., & Moreno, A. (2004). Basic Autonomy as a Fundamental Step in the Synthesis of Life. Artificial Life, 10(3), 235–259. doi:10.1162/1064546041255584
Ruiz-Mirazo, K., Pereto, J., & Moreno, A. (2004). A universal definition of life: autonomy and open-ended evolution. Origins of Life and Evolution of the Biosphere, 34(3), 323–346.
Moreno, A., & Barandiaran, X. E. (2004). A naturalized account of the inside-outside dichotomy. PHILOSOPHICA, 73, 11–26.
Barandiaran, X. E. (2004). Behavioral Adaptive Autonomy. A milestone on the Alife route to AI? In J. Pollack, M. A. Bedau, P. Husbands, T. Ikegami, & R. A. Watson (Eds.), Artificial life IX: proceedings of the Ninth International Conference on the Simulation and Synthesis of Artificial Life (pp. 514–521). MIT Press.
Buhrmann, T., & Di Paolo, E. A. (2004). Closing the loop: Evolving a model-free visually guided robot arm. In Proceedings of the Ninth International Conference on the Simulation and Synthesis of Living Systems 9 (pp. 63–72). Presented at the Artificial Life IX, Boston, Massachusetts: MIT Press, Cambridge, MA.
2002
Moreno, A., & Ruiz-Mirazo, K. (2002). Key issues regarding the origin, nature, and evolution of complexity in nature: Information as a central concept to understand biological organization. Emergence, 4(1-2), 63–76.
2001
Ruiz-Mirazo, K. (2001). Condiciones físicas para la aparición de sistemas autónomos con capacidades evolutivas abiertas. Ph. D. Dissertation, University of the Basc Country, San Sebastián.
Barandiaran, X. E. (2001). Adaptive Behaviour, Autonomy and Value systems. Normative function in dynamical adaptive systems (MSc Thesis). University of Sussex, Brighton, UK. Retrieved from http://www.ehu.es/ias-research/doc/2002_ba_msth_fin.pdf
Mateus Rocha, L. (2001). The physics and evolution of symbols and codes: reflections on the work of Howard Pattee. Biosystems, 60(1), 1–4.
Umerez, J. (2001). Howard Pattee’s theoretical biology—a radical epistemological stance to approach life, evolution and complexity. Biosystems, 60(1), 159–177.
2000
Ruiz-Mirazo, K., Etxeberria, A., Moreno, A., & Ibáñez, J. (2000). Organisms and their place in biology. Theory in biosciences, 119(3), 209–233.
Ruiz-Mirazo, K., & Moreno, A. (2000). Searching for the roots of autonomy: The natural and artificial paradigms revisited. Communication and Cognition–Artificial Intelligence, 17(3-4), 209–228.
Moreno, A., & Umerez, J. (2000). Downward causation at the core of living organization. Downward causation: Minds, bodies and matter, 99–117.
1999
Bergareche, A. M., & Ruiz-Mirazo, K. (1999). Metabolism and the problem of its universalization. BioSystems, 49(1), 45–61.
Ruiz-Mirazo, K., Moreno, A., Morán, F., Peretó, J., & Merelo, J. (1999). Designing a Simulation Model of a Self-Maintaining Cellular System. Advances in Artificial Life, 379–388.
Theraulaz, G., & Bonabeau, E. (1999). A brief history of stigmergy. Artificial life, 5(2), 97–116.
1998
Ruiz-Mirazo, K., Moreno, A., & Morán, F. (1998). Merging the energetic and the relational-constructive logic of life. Proceedings of Artificial Life VI, 448–451.
Ruiz-Mirazo, K., & Moreno, A. (1998). Autonomy and emergence: how systems become agents through the generation of functional constraints. Acta Polytechnica Scandinavica, Ma91, 273–282.
Umerez, J. (1998). The evolution of the symbolic domain in living systems and artificial life. In Evolutionary Systems (pp. 377–396). Springer.
1997
Moreno, A., Umerez, J., & Ibañez, J. (1997). Cognition and life: The autonomy of cognition. Brain and Cognition, 34(1), 107–129.
1995
Umerez, J., & Moreno, A. (1995). Origin of life as the first MST—control hierarchies and Interlevel relation. World Futures: Journal of General Evolution, 45(1-4), 139–154.
Umerez, J. (1995). Semantic Closure: a guiding notion to ground Artificial Life. In Advances in artificial life (pp. 77–94). Springer.
1994
Umerez, J. (1994). Jerarquías Autónomas.-Un estudio sobre el origen y la naturaleza de los procesos de control y de formación de niveles en sistemas naturales complejos. Ph. D. Dissertation, University of the Basque Country.
Moreno, A., Etxeberria, A., & Umerez, J. (1994). Universality without matter. In Artificial Life IV (pp. 406–410).
Libros
2013
Buhrmann, T., Di Paolo, E. A., & Barandiaran, X. E. (2013). A dynamical systems account of sensorimotor contingencies. Frontiers in Cognition, 4, 285. doi:10.3389/fpsyg.2013.00285
Barandiaran, X. E., & Egbert, M. D. (2013). Norm-Establishing and Norm-Following in Autonomous Agency. Artificial Life, 91(2), 1–24. doi:10.1162/ARTL_a_00094
Mavelli, F., & Ruiz-Mirazo, K. (2013). Theoretical conditions for the stationary reproduction of model protocells. Integrative Biology , 5 , 324–341. doi:10.1039/c2ib20222k
Aguilera, M., Bedia, M. G., Santos, B. A., & Barandiaran, X. E. (2013). The situated HKB model: how sensorimotor spatial coupling can alter oscillatory brain dynamics. Frontiers in Computational Neuroscience, 7. doi:10.3389/fncom.2013.00117
Aguilera, M., Morer, I., Barandiaran, X., & Bedia, M. (2013). Quantifying Political Self-Organization in Social Media. Fractal patterns in the Spanish 15M movement on Twitter. In Advances in Artificial Life, ECAL13 (pp. 395–402). MIT Press. doi:10.7551/978-0-262-31709-2-ch057
Borge-Holthoefer, J., Baños, R. A., González-Bailón, S., & Moreno, Y. (2013). Cascading behaviour in complex socio-technical networks. Journal of Complex Networks, cnt006. doi:10.1093/comnet/cnt006
Ruiz-Mirazo, K., & Moreno, A. (2013). Synthetic Biology: challenging life in order to grasp, use or extend it. Biological Theory (available on-line: July 2013). doi:10.1007/s13752-013-0129-8
2012
Santos, B., Barandiaran, X. E., Husbands, P., Aguilera, M., & Bedia, M. (2012). Sensorimotor coordination and metastability in a situated HKB model. Connection Science, 24(4), 143–161. doi:10.1080/09540091.2013.770821
Bich, L., & Damiano, L. (2012). Riscoprire la teoria dell’autopoiesi nella caratterizzazione dei sistemi sociali. In Sistemi, Modelli, Organizzazioni. Management e Complessità (pp. 83–110). Corisco.
Bich, L. (2012). Il concetto di “ milieu intérieur”: ruolo e implicazioni teoriche in un approccio sistemico allo studio del vivente. In Epistemologie in Dialogo? Contesti e costruzioni di conoscenze (pp. 179–210). Guaraldi. Retrieved from http://leonardobich.files.wordpress.com/2012/12/bich-il-concetto-di-milieu-interieur-ruolo-e-implicazioni-per-un-approccio-sistemico-allo-studio-del-vivente.pdf
Bich, L. (2012). L’ordine invisibile. Organizzazione, autonomia e complessità del vivente. Rubbettino.
Bich, L. (2012). Stability, regulation, and their role in minimal living systems. In A. Diéguez, V. Claramonte, J. Alcolea Banegas, G. Caponi, A. Etxeberría, P. Lorenzano, A. Marcos, J. Martínez Contreras, A. Rosas (eds.), I Congreso de la Asociación Iberoamericana de Filosofía de la Biología (AIFBI) (pp. 343–350). Universitat de Valencia.
Bich, L., & Arnellos, A. (2012). Autopoiesis, Autonomy, and Organizational Biology: Critical Remarks on Life After Ashby. Cybernetics & Human Knowing, 19(4), 75–103.
Bich, L., & Damiano, L. (2012). On the Emergence of Biology from Chemistry: A Discontinuist Perspective from the Point of View of Stability and Regulation. Origins of Life and Evolution of Biospheres, 42(5), 475–482. doi:10.1007/s11084-012-9310-5
Bich, L., & Damiano, L. (2012). Life, Autonomy and Cognition: An Organizational Approach to the Definition of the Universal Properties of Life. Origins of Life and Evolution of Biospheres, 42(5), 389–397. doi:10.1007/s11084-012-9300-7
Amilburu, A., Muro, E., & Martín, E. (2012). Crónica: II Taller en Filosofía de la Biología y de las Ciencias Cognitivas. Boletín de la SLMFCE, (56), 13–15.
Amilburu, A. (2012). Natural Kind Thinking in Philosophy of Science: a Meta-theoretical Analysis. In Proceedings of the VII Conference of the Spanish Society for Logic, Methodology and Philosophy of Science (pp. 340–342). Presented at the SLMFCE 2012, Santiago de Compostela.
Amilburu, A. (2012). Naturalising Kinds or Naturalised Kinds? In Proceedings of the 20th Anniversary Conference: The Answers of Philosophy (p. 8). Presented at the SIFA 2012, Alghero, Italy.
Piedrafita, G., Ruiz-Mirazo, K., Monnard, P.-A., Cornish-Bowden, A., & Montero, F. (2012). Viability conditions for a compartmentalized proto-metabolic system: a semi-empirical approach. . PLoS ONE, 7(6), e39480.
Bich, L., & Bocchi, G. (2012). Emergent processes as generation of discontinuities. In Methods, Models, Simulations And Approaches Towards A General Theory Of Change (pp. 135–146). WORLD SCIENTIFIC. Retrieved from http://www.worldscientific.com/doi/abs/10.1142/9789814383332_0009
Santos, B. A., Barandiaran, X. E., & Husbands, P. (2012). Synchrony and phase relation dynamics underlying sensorimotor coordination. Adaptive Behavior. doi:10.1177/1059712312451859
Arrieta-Valero, I. (2012). El compromiso ético de la medicina. A propósito de la obra de Alfred I. Tauber. Revista Internacional de Humanidades Médicas, 1, 1 – 8. Retrieved from http://humanidadesmedicas.com/files/2012/05/EL-COMPROMISO-%%C3%%89TICO-DE-LA-MEDICINA.pdf
Arrieta-Valero, I. (2012). La salud y la enfermedad [Review of GIROUX, E. (2011), Después de Canguilhem: definir la salud y la enfermedad, Bogota: Universidad El Bosque]. DILEMATA. International Journal of Applied Ethics, año 4 (2012), no 9, 259–265. Retrieved from http://www.dilemata.net/revista/index.php/dilemata/article/view/156/150
Bich, L. (2012). Complex emergence and the living organization: an epistemological framework for biology. Synthese, 185(2), 215–232. doi:10.1007/s11229-010-9722-6
Arnellos, A., & Moreno, A. (2012). How Functional Differentiation Originated in Prebiotic Evolution. Ludus Vitalis, XX(37), in press.
Zissis, D., Lekkas, D., & Arnellos, A. (2012). A systems theory approach to electronic voting complexity. In A. Manoharan & M. Holzer (Eds.), Active Citizen Participation in E-Government: A Global Perspective (pp. 128–151). IGI Global. Retrieved from doi:10.4018/978-1-4666-0116-1.ch007
Arnellos, A., Bruni, L., El-Hani, C. N., & Collier, J. (2012). Anticipatory Functions, Digital-Analog forms and Biosemiotics: Integrating the tools to model Information and Normativity in Autonomous Biological Agents. Biosemiotics, 5(3), forthcoming.
Xenakis, I., Arnellos, A., Spyrou, T., & Darzentas, J. (2012). Modelling the Aesthetic Judgement: an Interactive-semiotic Perspective. Cybernetics & Human Knowing, forthcoming.
Arrieta-Valero, I. (2012). El ejercicio razonable de la autonomía del paciente. DILEMATA. International Journal of Applied Ethics, año 4 (2012), no 8., 27–32. Retrieved from http://www.dilemata.net/revista/index.php/dilemata/article/view/111/113
Egbert, M. D., Barandiaran, X. E., & Di Paolo, E. A. (2012). Behavioral Metabolution: The Adaptive and Evolutionary Potential of Metabolism-Based Chemotaxis. Artificial Life, 18(1), 1–25. doi:10.1162/artl_a_00047
Rendón, A., Carton, D. G., Sot, J., García-Pacios, M., Montes, R., Valle, M., … Ruiz-Mirazo, K. (2012). Model Systems of Precursor Cellular Membranes: Long-Chain Alcohols Stabilize Spontaneously Formed Oleic Acid Vesicles. Biophysical Journal, 102(2), 278–286. doi:10.1016/j.bpj.2011.12.026
Barwich, A.-S., & Amilburu, A. (2012). Bridging Disciplines? An Enquiry on the Future of Natural Kinds in Philosophy and the Life Sciences. Biological Theory, 6(2), 187–190. Retrieved from http://link.springer.com/article/10.1007%%2Fs13752-012-0025-7
Xenakis, I., Arnellos, A., & Darzentas, J. (2012). The functional role of emotions in aesthetic judgment. New Ideas in Psychology, 30(2), 212–226. doi:10.1016/j.newideapsych.2011.09.003
Ruiz-Mirazo, K., & Moreno, A. (2012). Autonomy in evolution: from minimal to complex life. Synthese, 185(1), 21–52. doi:10.1007/s11229-011-9874-z
2011
Bich, L., & Mossio, M. (2011). On the Role of Constraints in the Emergence of Biological Organization. Logic and Philosophy of Science, IX(1), 381–388. Retrieved from http://www2.units.it/episteme/L&PS_Vol9No1/L&PS_Vol9No1_2011_34_Bich-Mossio.pdf
Ruiz-Mirazo, K. (2011). Protocell. In Encyclopedia of Astrobiology. Springer.
Ruiz-Mirazo, K., & Moreno, A. (2011). Life. In Encyclopedia of Astrobiology . Springer.
Vicente, A. (2011). Current Physics and “the Physical”. The British Journal for the Philosophy of Science, 62(2), 393–416. doi:10.1093/bjps/axq033
Arrieta-Valero, I. (2011). Deliberando en bioética: la gran suerte de contar con el cine [Review of MORATALLA, T. M., (2010), Bioética y cine. De la narración a la deliberación, Madrid: San Pablo]. DILEMATA. International Journal of Applied Ethics, año 2 (2011), no 6., 159–162. Retrieved from http://www.dilemata.net/revista/index.php/dilemata/article/view/97/101
Piedrafita, G., Mavelli, F., Morán, F., & Ruiz-Mirazo, K. (2011). On the Transition from Prebiotic to Proto-biological Membranes: From “Self-assembly”to “Self-production”. Advances in Artificial Life. Darwin Meets von Neumann, 256–264.
Ruiz-Mirazo, K., & Moreno, A. (2011). The Need for a Universal Definition of Life in Twenty-first-century Biology. Information and Living Systems: Philosophical and Scientific Perspectives, 1.
Moreno, A., & Ruiz-Mirazo, K. (2011). The Informational Nature of Biological Causality. Information and Living Systems: Philosophical and Scientific Perspectives, 157.
Ruiz-Mirazo, K., Piedrafita, G., Ciriaco, F., & Mavelli, F. (2011). Stochastic Simulations of Mixed-Lipid Compartments: From Self-Assembling Vesicles to Self-Producing Protocells. Software Tools and Algorithms for Biological Systems, 689–696.
Amilburu, A. (2011). An Organizational View of Biological Essences. In Proceedings of the ISHPSSB 2011 Conference (p. 52). Salt Lake City, Utah, USA.
Vicente, A., & Martinez Manrique, F. (2011). Inner Speech: Nature and Functions. Philosophy Compass, 6(3), 209–219. doi:10.1111/j.1747-9991.2010.00369.x
Arnellos, A., Lekkas, D., Zissis, D., Spyrou, T., & Darzentas, J. (2011). Fair digital signing: The structural reliability of signed documents. Computers & Security, 30(8), 580–596. doi:10.1016/j.cose.2011.09.001
Casado, A., & Moreno, A. (2011). Autonomy Beyond the Brain: What Neuroscience Offers to a More Interactive, Relational Bioethics. The American Journal of Bioethics – Neuroscience, 2(3), 54–56.
Bermejo-Luque, L., & Casado, Antonio. (2011). Bancos, bibliotecas y cementerios: usos de las analogías en el razonamiento sobre biotecnología. THEORIA. An International Journal for Theory, History and Foundations of Science, 26(71), 195–212.
Moreno, A., Ruiz-Mirazo, K., & Barandiaran, X. E. (2011). The impact of the paradigm of complexity on the foundational frameworks of biology and cognitive science. In C. A. Hooker, D. V. Gabbay, P. Thagard, & J. Woods (Eds.), Handbook of the Philosophy of Science (Vols. 1-10, Vol. Philosophy of Complex Systems, pp. 311–333). Elsevier.
Egbert, M. D., Barandiaran, X. E., & Di Paolo, E. A. (2011). Behavioral Metabolution: The Adaptive and Evolutionary Potential of Metabolism-Based Chemotaxis. Artificial Life, 18(1), 1–25. doi:10.1162/artl_a_00047
Santos, B., Barandiaran, X. E., & Husbands, P. (2011). Metastable dynamical regimes in oscillatory network modulated by an agent’s sensorimotor loop. In Proceedings of the IEEE Symposium Series on Computational Intelligence - SSCI 2011 (p. in press).
Aguilera, M., Bedia, M., Barandiaran, X. E., & Serón, O. (2011). The adjustment-deployment dilemma in organism’s behaviour: theoretical characterization and a model. In Proceedings of the IEEE Symposium Series on Computational Intelligence - SSCI 2011 (p. in press).
Egbert, M. D., & Barandiaran, X. E. (2011). Quantifying Normative Behaviour and Precariousness in Adaptive Agency. In T. Lenaerts, M. Giacobini, H. Bersini, P. Bourgine, M. Dorigo, & R. Doursat (Eds.), Proceedings of the 11th European Conference on Artificial Life (pp. 210–218). Presented at the ECAL, MIT Press.
Santos, B., Barandiaran, X. E., & Husbands, P. (2011). Neurodynamic regimes of phase relation and behavior in robotic models. BMC Neuroscience, 12(Suppl 1), P155.
Santos, B. A., Barandiaran, X. E., & Husbands, P. (2011). Metastable dynamical regimes in an oscillatory network modulated by an agent’s sensorimotor loop. In 2011 IEEE Symposium on Artificial Life (ALIFE) (pp. 124–131). Presented at the 2011 IEEE Symposium on Artificial Life (ALIFE), IEEE. doi:10.1109/ALIFE.2011.5954659
2010
Arrieta-Valero, I. (2010). ¿Es la autonomía personal el valor primordial de nuestras sociedades? biTARTE Revista de Humanidades, año 17 (agosto 2010), no 51., 5–28.
Arrieta-Valero, I., & Casado, A. (2010). La ética asistencial entre la autonomía y el paternalismo [Review of NYS, T., DENIER, Y., VANDEVELDE, T. (eds.) (2007), Autonomy and Paternalism. Reflections on the Theory and Practice of Health Care. Leuven: Peeters]. DILEMATA. International Journal of Applied Ethics, año 2 (2010), no 3., 135–137. Retrieved from http://www.dilemata.net/revista/index.php/dilemata/article/view/41/36
Saborido, C., Mossio, M., & Ruiz-Mirazo, K. (2010). In Search for Conceptual Bridges: A Review of “Functions in Biological and Artificial Worlds” Functions in Biological and Artificial Worlds. Comparative Philosophical Perspectives. U. Krohs and P. Kroes (Eds.). Vienna Series in Theoretical Biology.(2009, MIT Press.) 302 pages. Artificial Life, 16(4), 337–340.
Shirt-Ediss, B., Mavelli, F., & Ruiz-Mirazo, K. (2010). To Burst or Not To Burst: Osmotic Regulation in a Protocell Model Through Precursor Mechano-Sensitive Channels.
Piedrafita, G., Shirt-Ediss, B., Mavelli, F., Monnard, P. A., & Ruiz-Mirazo, K. (2010). “In Vitro”and “In Silico”Complementary Studies on the Physical Properties of Prebiotic Compartments.
Mavelli, F., & Ruiz-Mirazo, K. (2010). ENVIRONMENT: a computational platform to stochastically simulate reacting and self-reproducing lipid compartments. Physical biology, 7, 036002.
Ruiz-Mirazo, K., Peretó, J., & Moreno, A. (2010). Defining life or bringing biology to life. Origins of Life and Evolution of Biospheres, 40(2), 203–213.
Bich, L. (2010). Biological Autonomy and Systemic Integration. Origins of Life and Evolution of Biospheres, 40, 480–484.
Bich, L., Bocchi, G., & Damiano, L. (2010). An Epistemology of Contingency: Chance and Determinism at the Origin of Life. Origins of Life and Evolution of Biospheres, 40, 370–375.
Vicente, A. (2010). Clusters: On the Structure of Lexical Concepts. Dialectica, 64(1), 79–106. doi:10.1111/j.1746-8361.2010.01223.x
Bich, L. (2010). Complex emergence and the living organization: an epistemological framework for biology. Synthese. doi:10.1007/s11229-010-9722-6
Martínez-Manrique, F., & Vicente, A. (2010). What the…!’ The role of inner speech in conscious thought. Journal of Consciousness Studies, 17(9-10), 141–67.
Amilburu, A., & Etxeberria, A. (2010). Clasificaciones y géneros naturales: ¿estipulación o descubrimiento? In A. Jaume, M. Liz, D. Pérez Chico, M. Ponte, & M. Vazquez (Eds.), Proceedings of the sixth meeting of the Spanish Society for Analytic Philosophy. Presented at the SEFA VI, Tenerife.
Arnellos, A., Spyrou, T., & Darzentas, J. (2010). Towards the naturalization of agency based on an interactivist account of autonomy. New Ideas in Psychology, 28(3), 296–311. doi:10.1016/j.newideapsych.2009.09.005
Egbert, M. D., Barandiaran, X. E., & Di Paolo, E. A. (2010). Behavioral Metabolution: Metabolism based behavior enables new forms of adaptation and evolution. In Artificial Life XII: Proceedings of the Twelfth International Conference on the Simulation and Synthesis of Living Systems.
Egbert, M. D., Barandiaran, X. E., & Di Paolo, E. A. (2010). A Minimal Model of Metabolism-Based Chemotaxis. PLoS Comput Biol, 6(12), e1001004. doi:10.1371/journal.pcbi.1001004
2009
Vicente, A. (2009). Functions and emergence: when functional properties have something to say. Philosophical Studies, 152(2), 293–312. doi:10.1007/s11098-009-9477-4
Etxeberria, A., & Ruiz-Mirazo, K. (2009). The challenging biology of transients. EMBO reports, 10, S33–S36.
Moreno, A., & Ruiz-Mirazo, K. (2009). The problem of the emergence of functional diversity in prebiotic evolution. Biology & Philosophy, 24(5), 585–605. doi:10.1007/s10539-009-9178-6
Bich, L. (2009). Downward causation and relatedness in emergent systems: epistemological remarks (pp. 591–601). World Scientific Publishing Co. Pte. Ltd. doi:10.1142/9789812793478_0037
Casado, A. (2009). Stars and Triangles: Controversial Bioethics in Spanish Film. In Bioethics at the Movies (1st ed., pp. 328–344). The Johns Hopkins University Press.
Casado, A. (2009). Bioética para legos. Plaza y Valdés.
Egbert, M. D., Di Paolo, E., & Barandiaran, X. E. (2009). Chemo-ethology of a adaptive protocell: Sensor-less sensitivity to implicit viability conditions. In Proceedings of the Ninth European Conference on Artificial Life (pp. 242–249). Presented at the ECAL09, Budapest: Springer Verlag.
Barandiaran, X. E., & Chemero, A. (2009). Animats in the Modeling Ecosystem. Adaptive Behavior, 17(4), 287–292. doi:10.1177/1059712309340847
Barandiaran, X. E., Di Paolo, E., & Rohde, M. (2009). Defining Agency: Individuality, Normativity, Asymmetry, and Spatio-temporality in Action. Adaptive Behavior, 17(5), 367–386. doi:10.1177/1059712309343819
Umerez, J. (2009). Where does Pattee’s “how does a molecule become a message?” belong in the history of biosemiotics? Biosemiotics, 2(3), 269–290.
2008
Arnellos, A., Spyrou, T., & Darzentas, J. (2008). Meaning Needs Functional Emergence: Shedding Novel Light onto Difficult Problems. Cybernetics & Human Knowing, 15(3-4), 50–56.
Neuman, Y., Arnellos, A., & Nave, O. (2008). Sign-Mediated Concept Formation. The American Journal of Semiotics, 24, 107–133. Retrieved from http://secure.pdcnet.org/pdc/bvdb.nsf/toc?openform&journal=pdc_ajs&yearrange=2001%%20-%%202011&category=0024_40911_2008#
Ruiz-Mirazo, K., & Mavelli, F. (2008). On the way towards “basic autonomous agents”: Stochastic simulations of minimal lipid-peptide cells. Biosystems, 91(2), 374–387.
Mavelli, F., Lerario, M., & Ruiz-Mirazo, K. (2008). ENVIRONMENT’: a stochastic simulation platform to study protocell dynamics. Proceedings of BIOCOMP, 2, 934–941.
Ruiz-Mirazo, K., Umerez, J., & Moreno, A. (2008). Enabling conditions for “open-ended evolution”. Biology and Philosophy, 23(1), 67–85.
Bich, L., & Damiano, L. (2008). Order in the Nothing: Autopoiesis and the Organizational Characterization of the Living. Electronic Journal of Theoretical Physics, 4(16), 343–373.
Vicente, A., & Martínez‐manrique, F. (2008). Thought, Language, and the Argument from Explicitness. Metaphilosophy, 39(3), 381–401. doi:10.1111/j.1467-9973.2008.00545.x
Arnellos, A., Spyrou, T., & Darzentas, J. (2008). Emergence and Downward Causation in Contemporary Artificial Agents: Implications for their Autonomy and Some Design Guidelines. Cybernetics & Human Knowing, 15(3-4), 15–41.
El-Hani, C. N., Arnellos, A., & Queiroza, J. (2008). Modeling a Semiotic Process in the Immune System: Signal Transduction in B-cells Activation. tripleC - Cognition, Communication, Co-operation, 5(2), 24–36. Retrieved from http://www.triple-c.at/index.php/tripleC/article/viewArticle/56
Amilburu, A. (2008). La masa sin cualidades. biTARTE, 45, 63–78.
Barandiaran, X. E., & Moreno, A. (2008). Adaptivity: From Metabolism to Behavior. Adaptive Behavior, 16(5), 325–344. doi:10.1177/1059712308093868
Barandiaran, X., E., & Moreno, A. (2008). On the nature of neural information: A critique of the received view 50 years later. Neurocomputing, 71(4-6), 681–692. doi:10.1016/j.neucom.2007.09.014
Barandiaran, X. E. (2008). Mental Life: a naturalized approach to the autonomy of cognitive agents. (PhD Thesis). University of the Basque Country (UPV-EHU), Donostia - San Sebastián, Gipuzkoa, Spain. Retrieved from http://xabier.barandiaran.net/2010/06/barandiaran_-_2008_-_phd_thesis.pdf
Barandiaran, X., E., & Ruiz-Mirazo, K. (2008). Modelling autonomy: Simulating the essence of life and cognition. Biosystems, 91(2), 295–304. doi:10.1016/j.biosystems.2007.07.001
Barandiaran, X. E., & Di Paolo, E. A. (2008). Artificial Mental Life. In S. Bullock, J. Noble, R. Watson, & M. Bedau (Eds.), Artificial Life XI: Proceedings of the Eleventh International Conference on the Simulation and Synthesis of Living Systems (p. 747). Cambridge, MA.: MIT Press.
Izquierdo, E., & Buhrmann, T. (2008). Analysis of a dynamical recurrent neural network evolved for two qualitatively different tasks: walking and chemotaxis. In S. Bullock, J. Noble, R. Watson, & M. Bedau (Eds.), Artificial Life XI: Proceedings of the Eleventh International Conference on the Simulation and Synthesis of Living Systems (pp. 257–264). MIT Press, Cambridge, MA. Retrieved from http://www.alifexi.org/papers/ALIFExi_pp257-264.pdf
Umerez, J. (2008). Book Review: A Key Conceptual Tool for ALifers. Artificial Life, 14(2), 235–238.
Moreno, A., Etxeberria, A., & Umerez, J. (2008). The autonomy of biological individuals and artificial models. BioSystems, 91(2), 309–319.
Ruiz-Mirazo, K., Umerez, J., & Moreno, A. (2008). Enabling conditions for “open-ended evolution.” Biology & Philosophy, 23(1), 67–85.
2007
Brands, M., Arnellos, A., Spyrou, T., & Darzentas, J. (2007). A Biosemiotic Analysis of Serotonin’s Complex Functionality. In Biosemiotics in Transdisciplinary Contexts (pp. 125–132). Helsinki, Umweb.
Mavelli, F., & Ruiz-Mirazo, K. (2007). Stochastic simulations of fatty-acid proto-cell models. Proceedings of SPIE, 6602, 66021B.
Ruiz-Mirazo, K., & Mavelli, F. (2007). Simulation model for functionalized vesicles: lipid-peptide integration in minimal protocells. Advances in Artificial Life, 32–41.
Mavelli, F., & Ruiz-Mirazo, K. (2007). Question 8: bridging the gap between in silico and in vitro approaches to minimal cells. Origins of Life and Evolution of Biospheres, 37(4), 455–458.
Ruiz-Mirazo, K., & Mavelli, F. (2007). Question 7: modelling minimal “lipid-peptide”cells. Origins of Life and Evolution of Biospheres, 37(4), 433–437.
Mavelli, F., & Ruiz-Mirazo, K. (2007). Stochastic simulations of minimal self-reproducing cellular systems. Philosophical Transactions of the Royal Society B: Biological Sciences, 362(1486), 1789.
Bich, L., & Damiano, L. (2007). Question 9: Theoretical and Artificial Construction of the Living: Redefining the Approach from an Autopoietic Point of View. Origins of Life and Evolution of Biospheres, 37(4-5), 459–464. doi:10.1007/s11084-007-9082-5
Arnellos, Spyrou, & Darzentas, J. (2007). Exploring Creativity in the Design Process: A Systems-Semiotic Perspective. Cybernetics & Human Knowing, 14(1), 37–64.
Arnellos, A., Spyrou, T., & Darzentas, J. (2007). Cybernetic embodiment and the role of autonomy in the design process. Kybernetes, 36(9/10), 1207–1224. doi:10.1108/03684920710827247
Ruiz-Mirazo, K., Umerez, J., & Moreno, A. (2007). Enabling conditions for “open-ended evolution”. Biology & Philosophy, 23(1), 67–85. doi:10.1007/s10539-007-9076-8
Barandiaran, X. E. (2007). Mental Life: conceptual models and synthetic methodologies for a post-cognitivist psychology. In B. Wallace, A. Ross, J. Davies, & T. Anderson (Eds.), The World, the Mind and the Body: Psychology after cognitivism (pp. 49–90). Imprint Academic.
Frenz, H., Lappe, M., Kolesnik, M., & Buhrmann, T. (2007). Estimation of travel distance from visual motion in virtual environments. ACM Trans. Appl. Percept., 4(1). doi:10.1145/1227134.1227137
Barandiaran, X. E. (2007). Mental Life: conceptual models and synthetic methodologies for a post-cognitivist psychology. In B. Wallace, A. Ross, J. Davies, & T. Anderson (Eds.), The World, the Mind and the Body: Psychology after cognitivism (pp. 49–90). Imprint Academic.
Siqueiros, J., & Umerez, J. (2007). Grasping the complexity of living systems through integrative levels and hierarchies. Worldviews, Science and Us: Philosophy and Complexity: University of Liverpool, UK, 11-14 September 2005, 250.
2006
Vicente, A. (2006). On the Causal Completeness of Physics. International Studies in the Philosophy of Science, 20(2), 149–171. doi:10.1080/02698590600814332
Ruiz-Mirazo, K., & Moreno, A. (2006). On the origins of information and its relevance for biological complexity. Biological Theory, 1(3), 227–229.
Ruiz-Mirazo, K., Stano, P., & Luisi, P. L. (2006). Lysozyme effect on oleic acid/oleate vesicles. Journal of Liposome Research, 16(2), 143–154.
Bich, L. (2006). Autopoiesis and Emergence. In G. Minati, E. Pessa, & M. Abram (Eds.), Systemics of Emergence: Research and Development (pp. 281–292). New York: Springer-Verlag.
Arnellos, A., Vosinakis, S., Spyrou, T., & Darzentas, J. (2006). The Emergence of Autonomous Representations in Artificial Agents. Journal of Computers, 1(6). doi:10.4304/jcp.1.6.29-36
Barandiaran, X. E., & Lluis, G. (2006). Autonomía, Comunicación y Evolución en redes bacterianas y tecnológicas. biTARTE, (38), 35–60.
Barandiaran, X. E., & Moreno, A. (2006). ALife Models as Epistemic Artefacts. In Artificial Life X : Proceedings of the Tenth International Conference on the Simulation and Synthesis of Living Systems (pp. 513–519). The MIT Press (Bradford Books).
Barandiaran, X. E., & Moreno, A. (2006). On What Makes Certain Dynamical Systems Cognitive: A Minimally Cognitive Organization Program. Adaptive Behavior, 14(2), 171–185. doi:10.1177/105971230601400208
Buhrmann, T., & Paolo, E. (2006). Biological Actuators Are Not Just Springs. In S. Nolfi, G. Baldassarre, R. Calabretta, J. C. T. Hallam, D. Marocco, J.-A. Meyer, … D. Parisi (Eds.), From Animals to Animats 9 (Vol. 4095, pp. 89–100). Berlin, Heidelberg: Springer Berlin Heidelberg. Retrieved from http://dblp.uni-trier.de/rec/bibtex/conf/sab/BuehrmannP06
Barandiaran, X. E., & Moreno, A. (2006). On What Makes Certain Dynamical Systems Cognitive: A Minimally Cognitive Organization Program. Adaptive Behavior, 14(2), 171–185. doi:10.1177/105971230601400208
Etxeberria, A., Umerez, J., & Ambrogi, A. (2006). Organismo y organización en la biología teórica?` Vuelta al organicismo 50 años después. Medio siglo de doble hélice. Palma de Mallorca, España: Edicions Universitat de les Illes Balears.
2005
Arnellos, A., Spyrou, T., & Darzentas, J. (2005). Dynamic Interactions in Artificial Environments: Causal and Non-Causal Aspects for the Emergence of Meaning. Systemics, Cybernetics and Informatics, 3(1), 82–89. Retrieved from http://www.iiisci.org/Journal/CV$/sci/pdfs/P416905.pdf
Vicente, A., & Martínez‐Manrique, F. (2005). Semantic Underdetermination and the Cognitive Uses of Language. Mind & Language, 20(5), 537–558. doi:10.1111/j.0268-1064.2005.00299.x
Vicente, A., & Martínez‐Manrique, F. (2005). Semantic Underdetermination and the Cognitive Uses of Language. Mind & Language, 20(5), 537–558. doi:10.1111/j.0268-1064.2005.00299.x
Lappe, M., Frenz, H., Buhrmann, T., & Kolesnik, M. (2005). Virtual odometry from visual flow. Proceedings of SPIE, 5666(1), 493. doi:doi:10.1117/12.610863
Umerez, J. (2005). Critical assessment of the impact of ELSI programs. Retrieved from http://ishpssb.org/wp-content/uploads/2012/06/viewabstract_018.html
Casado, A. C. D. (2005). Thoreau : biografía esencial. Ediciones Acuarela.
2004
Velasco, C. A., Mohamad, Y., Gilman, A. S., Viorres, N., Vlachogiannis, E., Arnellos, A., & Darzentas, J. S. (2004). The need for user information and its relationship to device profiles. Universal Access in the Information Society, 3(1), 88–95. doi:10.1007/s10209-003-0075-5
Ruiz-Mirazo, K., & Moreno, A. (2004). Basic Autonomy as a Fundamental Step in the Synthesis of Life. Artificial Life, 10(3), 235–259. doi:10.1162/1064546041255584
Ruiz-Mirazo, K., Pereto, J., & Moreno, A. (2004). A universal definition of life: autonomy and open-ended evolution. Origins of Life and Evolution of the Biosphere, 34(3), 323–346.
Moreno, A., & Barandiaran, X. E. (2004). A naturalized account of the inside-outside dichotomy. PHILOSOPHICA, 73, 11–26.
Barandiaran, X. E. (2004). Behavioral Adaptive Autonomy. A milestone on the Alife route to AI? In J. Pollack, M. A. Bedau, P. Husbands, T. Ikegami, & R. A. Watson (Eds.), Artificial life IX: proceedings of the Ninth International Conference on the Simulation and Synthesis of Artificial Life (pp. 514–521). MIT Press.
Buhrmann, T., & Di Paolo, E. A. (2004). Closing the loop: Evolving a model-free visually guided robot arm. In Proceedings of the Ninth International Conference on the Simulation and Synthesis of Living Systems 9 (pp. 63–72). Presented at the Artificial Life IX, Boston, Massachusetts: MIT Press, Cambridge, MA.
2002
Moreno, A., & Ruiz-Mirazo, K. (2002). Key issues regarding the origin, nature, and evolution of complexity in nature: Information as a central concept to understand biological organization. Emergence, 4(1-2), 63–76.
2001
Ruiz-Mirazo, K. (2001). Condiciones físicas para la aparición de sistemas autónomos con capacidades evolutivas abiertas. Ph. D. Dissertation, University of the Basc Country, San Sebastián.
Barandiaran, X. E. (2001). Adaptive Behaviour, Autonomy and Value systems. Normative function in dynamical adaptive systems (MSc Thesis). University of Sussex, Brighton, UK. Retrieved from http://www.ehu.es/ias-research/doc/2002_ba_msth_fin.pdf
Mateus Rocha, L. (2001). The physics and evolution of symbols and codes: reflections on the work of Howard Pattee. Biosystems, 60(1), 1–4.
Umerez, J. (2001). Howard Pattee’s theoretical biology—a radical epistemological stance to approach life, evolution and complexity. Biosystems, 60(1), 159–177.
2000
Ruiz-Mirazo, K., Etxeberria, A., Moreno, A., & Ibáñez, J. (2000). Organisms and their place in biology. Theory in biosciences, 119(3), 209–233.
Ruiz-Mirazo, K., & Moreno, A. (2000). Searching for the roots of autonomy: The natural and artificial paradigms revisited. Communication and Cognition–Artificial Intelligence, 17(3-4), 209–228.
Moreno, A., & Umerez, J. (2000). Downward causation at the core of living organization. Downward causation: Minds, bodies and matter, 99–117.
1999
Bergareche, A. M., & Ruiz-Mirazo, K. (1999). Metabolism and the problem of its universalization. BioSystems, 49(1), 45–61.
Ruiz-Mirazo, K., Moreno, A., Morán, F., Peretó, J., & Merelo, J. (1999). Designing a Simulation Model of a Self-Maintaining Cellular System. Advances in Artificial Life, 379–388.
Theraulaz, G., & Bonabeau, E. (1999). A brief history of stigmergy. Artificial life, 5(2), 97–116.
1998
Ruiz-Mirazo, K., Moreno, A., & Morán, F. (1998). Merging the energetic and the relational-constructive logic of life. Proceedings of Artificial Life VI, 448–451.
Ruiz-Mirazo, K., & Moreno, A. (1998). Autonomy and emergence: how systems become agents through the generation of functional constraints. Acta Polytechnica Scandinavica, Ma91, 273–282.
Umerez, J. (1998). The evolution of the symbolic domain in living systems and artificial life. In Evolutionary Systems (pp. 377–396). Springer.
1997
Moreno, A., Umerez, J., & Ibañez, J. (1997). Cognition and life: The autonomy of cognition. Brain and Cognition, 34(1), 107–129.
1995
Umerez, J., & Moreno, A. (1995). Origin of life as the first MST—control hierarchies and Interlevel relation. World Futures: Journal of General Evolution, 45(1-4), 139–154.
Umerez, J. (1995). Semantic Closure: a guiding notion to ground Artificial Life. In Advances in artificial life (pp. 77–94). Springer.
1994
Umerez, J. (1994). Jerarquías Autónomas.-Un estudio sobre el origen y la naturaleza de los procesos de control y de formación de niveles en sistemas naturales complejos. Ph. D. Dissertation, University of the Basque Country.
Moreno, A., Etxeberria, A., & Umerez, J. (1994). Universality without matter. In Artificial Life IV (pp. 406–410).
Capítulos de Libros
2013
Buhrmann, T., Di Paolo, E. A., & Barandiaran, X. E. (2013). A dynamical systems account of sensorimotor contingencies. Frontiers in Cognition, 4, 285. doi:10.3389/fpsyg.2013.00285
Barandiaran, X. E., & Egbert, M. D. (2013). Norm-Establishing and Norm-Following in Autonomous Agency. Artificial Life, 91(2), 1–24. doi:10.1162/ARTL_a_00094
Mavelli, F., & Ruiz-Mirazo, K. (2013). Theoretical conditions for the stationary reproduction of model protocells. Integrative Biology , 5 , 324–341. doi:10.1039/c2ib20222k
Aguilera, M., Bedia, M. G., Santos, B. A., & Barandiaran, X. E. (2013). The situated HKB model: how sensorimotor spatial coupling can alter oscillatory brain dynamics. Frontiers in Computational Neuroscience, 7. doi:10.3389/fncom.2013.00117
Aguilera, M., Morer, I., Barandiaran, X., & Bedia, M. (2013). Quantifying Political Self-Organization in Social Media. Fractal patterns in the Spanish 15M movement on Twitter. In Advances in Artificial Life, ECAL13 (pp. 395–402). MIT Press. doi:10.7551/978-0-262-31709-2-ch057
Borge-Holthoefer, J., Baños, R. A., González-Bailón, S., & Moreno, Y. (2013). Cascading behaviour in complex socio-technical networks. Journal of Complex Networks, cnt006. doi:10.1093/comnet/cnt006
Ruiz-Mirazo, K., & Moreno, A. (2013). Synthetic Biology: challenging life in order to grasp, use or extend it. Biological Theory (available on-line: July 2013). doi:10.1007/s13752-013-0129-8
2012
Santos, B., Barandiaran, X. E., Husbands, P., Aguilera, M., & Bedia, M. (2012). Sensorimotor coordination and metastability in a situated HKB model. Connection Science, 24(4), 143–161. doi:10.1080/09540091.2013.770821
Bich, L., & Damiano, L. (2012). Riscoprire la teoria dell’autopoiesi nella caratterizzazione dei sistemi sociali. In Sistemi, Modelli, Organizzazioni. Management e Complessità (pp. 83–110). Corisco.
Bich, L. (2012). Il concetto di “ milieu intérieur”: ruolo e implicazioni teoriche in un approccio sistemico allo studio del vivente. In Epistemologie in Dialogo? Contesti e costruzioni di conoscenze (pp. 179–210). Guaraldi. Retrieved from http://leonardobich.files.wordpress.com/2012/12/bich-il-concetto-di-milieu-interieur-ruolo-e-implicazioni-per-un-approccio-sistemico-allo-studio-del-vivente.pdf
Bich, L. (2012). L’ordine invisibile. Organizzazione, autonomia e complessità del vivente. Rubbettino.
Bich, L. (2012). Stability, regulation, and their role in minimal living systems. In A. Diéguez, V. Claramonte, J. Alcolea Banegas, G. Caponi, A. Etxeberría, P. Lorenzano, A. Marcos, J. Martínez Contreras, A. Rosas (eds.), I Congreso de la Asociación Iberoamericana de Filosofía de la Biología (AIFBI) (pp. 343–350). Universitat de Valencia.
Bich, L., & Arnellos, A. (2012). Autopoiesis, Autonomy, and Organizational Biology: Critical Remarks on Life After Ashby. Cybernetics & Human Knowing, 19(4), 75–103.
Bich, L., & Damiano, L. (2012). On the Emergence of Biology from Chemistry: A Discontinuist Perspective from the Point of View of Stability and Regulation. Origins of Life and Evolution of Biospheres, 42(5), 475–482. doi:10.1007/s11084-012-9310-5
Bich, L., & Damiano, L. (2012). Life, Autonomy and Cognition: An Organizational Approach to the Definition of the Universal Properties of Life. Origins of Life and Evolution of Biospheres, 42(5), 389–397. doi:10.1007/s11084-012-9300-7
Amilburu, A., Muro, E., & Martín, E. (2012). Crónica: II Taller en Filosofía de la Biología y de las Ciencias Cognitivas. Boletín de la SLMFCE, (56), 13–15.
Amilburu, A. (2012). Natural Kind Thinking in Philosophy of Science: a Meta-theoretical Analysis. In Proceedings of the VII Conference of the Spanish Society for Logic, Methodology and Philosophy of Science (pp. 340–342). Presented at the SLMFCE 2012, Santiago de Compostela.
Amilburu, A. (2012). Naturalising Kinds or Naturalised Kinds? In Proceedings of the 20th Anniversary Conference: The Answers of Philosophy (p. 8). Presented at the SIFA 2012, Alghero, Italy.
Piedrafita, G., Ruiz-Mirazo, K., Monnard, P.-A., Cornish-Bowden, A., & Montero, F. (2012). Viability conditions for a compartmentalized proto-metabolic system: a semi-empirical approach. . PLoS ONE, 7(6), e39480.
Bich, L., & Bocchi, G. (2012). Emergent processes as generation of discontinuities. In Methods, Models, Simulations And Approaches Towards A General Theory Of Change (pp. 135–146). WORLD SCIENTIFIC. Retrieved from http://www.worldscientific.com/doi/abs/10.1142/9789814383332_0009
Santos, B. A., Barandiaran, X. E., & Husbands, P. (2012). Synchrony and phase relation dynamics underlying sensorimotor coordination. Adaptive Behavior. doi:10.1177/1059712312451859
Arrieta-Valero, I. (2012). El compromiso ético de la medicina. A propósito de la obra de Alfred I. Tauber. Revista Internacional de Humanidades Médicas, 1, 1 – 8. Retrieved from http://humanidadesmedicas.com/files/2012/05/EL-COMPROMISO-%%C3%%89TICO-DE-LA-MEDICINA.pdf
Arrieta-Valero, I. (2012). La salud y la enfermedad [Review of GIROUX, E. (2011), Después de Canguilhem: definir la salud y la enfermedad, Bogota: Universidad El Bosque]. DILEMATA. International Journal of Applied Ethics, año 4 (2012), no 9, 259–265. Retrieved from http://www.dilemata.net/revista/index.php/dilemata/article/view/156/150
Bich, L. (2012). Complex emergence and the living organization: an epistemological framework for biology. Synthese, 185(2), 215–232. doi:10.1007/s11229-010-9722-6
Arnellos, A., & Moreno, A. (2012). How Functional Differentiation Originated in Prebiotic Evolution. Ludus Vitalis, XX(37), in press.
Zissis, D., Lekkas, D., & Arnellos, A. (2012). A systems theory approach to electronic voting complexity. In A. Manoharan & M. Holzer (Eds.), Active Citizen Participation in E-Government: A Global Perspective (pp. 128–151). IGI Global. Retrieved from doi:10.4018/978-1-4666-0116-1.ch007
Arnellos, A., Bruni, L., El-Hani, C. N., & Collier, J. (2012). Anticipatory Functions, Digital-Analog forms and Biosemiotics: Integrating the tools to model Information and Normativity in Autonomous Biological Agents. Biosemiotics, 5(3), forthcoming.
Xenakis, I., Arnellos, A., Spyrou, T., & Darzentas, J. (2012). Modelling the Aesthetic Judgement: an Interactive-semiotic Perspective. Cybernetics & Human Knowing, forthcoming.
Arrieta-Valero, I. (2012). El ejercicio razonable de la autonomía del paciente. DILEMATA. International Journal of Applied Ethics, año 4 (2012), no 8., 27–32. Retrieved from http://www.dilemata.net/revista/index.php/dilemata/article/view/111/113
Egbert, M. D., Barandiaran, X. E., & Di Paolo, E. A. (2012). Behavioral Metabolution: The Adaptive and Evolutionary Potential of Metabolism-Based Chemotaxis. Artificial Life, 18(1), 1–25. doi:10.1162/artl_a_00047
Rendón, A., Carton, D. G., Sot, J., García-Pacios, M., Montes, R., Valle, M., … Ruiz-Mirazo, K. (2012). Model Systems of Precursor Cellular Membranes: Long-Chain Alcohols Stabilize Spontaneously Formed Oleic Acid Vesicles. Biophysical Journal, 102(2), 278–286. doi:10.1016/j.bpj.2011.12.026
Barwich, A.-S., & Amilburu, A. (2012). Bridging Disciplines? An Enquiry on the Future of Natural Kinds in Philosophy and the Life Sciences. Biological Theory, 6(2), 187–190. Retrieved from http://link.springer.com/article/10.1007%%2Fs13752-012-0025-7
Xenakis, I., Arnellos, A., & Darzentas, J. (2012). The functional role of emotions in aesthetic judgment. New Ideas in Psychology, 30(2), 212–226. doi:10.1016/j.newideapsych.2011.09.003
Ruiz-Mirazo, K., & Moreno, A. (2012). Autonomy in evolution: from minimal to complex life. Synthese, 185(1), 21–52. doi:10.1007/s11229-011-9874-z
2011
Bich, L., & Mossio, M. (2011). On the Role of Constraints in the Emergence of Biological Organization. Logic and Philosophy of Science, IX(1), 381–388. Retrieved from http://www2.units.it/episteme/L&PS_Vol9No1/L&PS_Vol9No1_2011_34_Bich-Mossio.pdf
Ruiz-Mirazo, K. (2011). Protocell. In Encyclopedia of Astrobiology. Springer.
Ruiz-Mirazo, K., & Moreno, A. (2011). Life. In Encyclopedia of Astrobiology . Springer.
Vicente, A. (2011). Current Physics and “the Physical”. The British Journal for the Philosophy of Science, 62(2), 393–416. doi:10.1093/bjps/axq033
Arrieta-Valero, I. (2011). Deliberando en bioética: la gran suerte de contar con el cine [Review of MORATALLA, T. M., (2010), Bioética y cine. De la narración a la deliberación, Madrid: San Pablo]. DILEMATA. International Journal of Applied Ethics, año 2 (2011), no 6., 159–162. Retrieved from http://www.dilemata.net/revista/index.php/dilemata/article/view/97/101
Piedrafita, G., Mavelli, F., Morán, F., & Ruiz-Mirazo, K. (2011). On the Transition from Prebiotic to Proto-biological Membranes: From “Self-assembly”to “Self-production”. Advances in Artificial Life. Darwin Meets von Neumann, 256–264.
Ruiz-Mirazo, K., & Moreno, A. (2011). The Need for a Universal Definition of Life in Twenty-first-century Biology. Information and Living Systems: Philosophical and Scientific Perspectives, 1.
Moreno, A., & Ruiz-Mirazo, K. (2011). The Informational Nature of Biological Causality. Information and Living Systems: Philosophical and Scientific Perspectives, 157.
Ruiz-Mirazo, K., Piedrafita, G., Ciriaco, F., & Mavelli, F. (2011). Stochastic Simulations of Mixed-Lipid Compartments: From Self-Assembling Vesicles to Self-Producing Protocells. Software Tools and Algorithms for Biological Systems, 689–696.
Amilburu, A. (2011). An Organizational View of Biological Essences. In Proceedings of the ISHPSSB 2011 Conference (p. 52). Salt Lake City, Utah, USA.
Vicente, A., & Martinez Manrique, F. (2011). Inner Speech: Nature and Functions. Philosophy Compass, 6(3), 209–219. doi:10.1111/j.1747-9991.2010.00369.x
Arnellos, A., Lekkas, D., Zissis, D., Spyrou, T., & Darzentas, J. (2011). Fair digital signing: The structural reliability of signed documents. Computers & Security, 30(8), 580–596. doi:10.1016/j.cose.2011.09.001
Casado, A., & Moreno, A. (2011). Autonomy Beyond the Brain: What Neuroscience Offers to a More Interactive, Relational Bioethics. The American Journal of Bioethics – Neuroscience, 2(3), 54–56.
Bermejo-Luque, L., & Casado, Antonio. (2011). Bancos, bibliotecas y cementerios: usos de las analogías en el razonamiento sobre biotecnología. THEORIA. An International Journal for Theory, History and Foundations of Science, 26(71), 195–212.
Moreno, A., Ruiz-Mirazo, K., & Barandiaran, X. E. (2011). The impact of the paradigm of complexity on the foundational frameworks of biology and cognitive science. In C. A. Hooker, D. V. Gabbay, P. Thagard, & J. Woods (Eds.), Handbook of the Philosophy of Science (Vols. 1-10, Vol. Philosophy of Complex Systems, pp. 311–333). Elsevier.
Egbert, M. D., Barandiaran, X. E., & Di Paolo, E. A. (2011). Behavioral Metabolution: The Adaptive and Evolutionary Potential of Metabolism-Based Chemotaxis. Artificial Life, 18(1), 1–25. doi:10.1162/artl_a_00047
Santos, B., Barandiaran, X. E., & Husbands, P. (2011). Metastable dynamical regimes in oscillatory network modulated by an agent’s sensorimotor loop. In Proceedings of the IEEE Symposium Series on Computational Intelligence - SSCI 2011 (p. in press).
Aguilera, M., Bedia, M., Barandiaran, X. E., & Serón, O. (2011). The adjustment-deployment dilemma in organism’s behaviour: theoretical characterization and a model. In Proceedings of the IEEE Symposium Series on Computational Intelligence - SSCI 2011 (p. in press).
Egbert, M. D., & Barandiaran, X. E. (2011). Quantifying Normative Behaviour and Precariousness in Adaptive Agency. In T. Lenaerts, M. Giacobini, H. Bersini, P. Bourgine, M. Dorigo, & R. Doursat (Eds.), Proceedings of the 11th European Conference on Artificial Life (pp. 210–218). Presented at the ECAL, MIT Press.
Santos, B., Barandiaran, X. E., & Husbands, P. (2011). Neurodynamic regimes of phase relation and behavior in robotic models. BMC Neuroscience, 12(Suppl 1), P155.
Santos, B. A., Barandiaran, X. E., & Husbands, P. (2011). Metastable dynamical regimes in an oscillatory network modulated by an agent’s sensorimotor loop. In 2011 IEEE Symposium on Artificial Life (ALIFE) (pp. 124–131). Presented at the 2011 IEEE Symposium on Artificial Life (ALIFE), IEEE. doi:10.1109/ALIFE.2011.5954659
2010
Arrieta-Valero, I. (2010). ¿Es la autonomía personal el valor primordial de nuestras sociedades? biTARTE Revista de Humanidades, año 17 (agosto 2010), no 51., 5–28.
Arrieta-Valero, I., & Casado, A. (2010). La ética asistencial entre la autonomía y el paternalismo [Review of NYS, T., DENIER, Y., VANDEVELDE, T. (eds.) (2007), Autonomy and Paternalism. Reflections on the Theory and Practice of Health Care. Leuven: Peeters]. DILEMATA. International Journal of Applied Ethics, año 2 (2010), no 3., 135–137. Retrieved from http://www.dilemata.net/revista/index.php/dilemata/article/view/41/36
Saborido, C., Mossio, M., & Ruiz-Mirazo, K. (2010). In Search for Conceptual Bridges: A Review of “Functions in Biological and Artificial Worlds” Functions in Biological and Artificial Worlds. Comparative Philosophical Perspectives. U. Krohs and P. Kroes (Eds.). Vienna Series in Theoretical Biology.(2009, MIT Press.) 302 pages. Artificial Life, 16(4), 337–340.
Shirt-Ediss, B., Mavelli, F., & Ruiz-Mirazo, K. (2010). To Burst or Not To Burst: Osmotic Regulation in a Protocell Model Through Precursor Mechano-Sensitive Channels.
Piedrafita, G., Shirt-Ediss, B., Mavelli, F., Monnard, P. A., & Ruiz-Mirazo, K. (2010). “In Vitro”and “In Silico”Complementary Studies on the Physical Properties of Prebiotic Compartments.
Mavelli, F., & Ruiz-Mirazo, K. (2010). ENVIRONMENT: a computational platform to stochastically simulate reacting and self-reproducing lipid compartments. Physical biology, 7, 036002.
Ruiz-Mirazo, K., Peretó, J., & Moreno, A. (2010). Defining life or bringing biology to life. Origins of Life and Evolution of Biospheres, 40(2), 203–213.
Bich, L. (2010). Biological Autonomy and Systemic Integration. Origins of Life and Evolution of Biospheres, 40, 480–484.
Bich, L., Bocchi, G., & Damiano, L. (2010). An Epistemology of Contingency: Chance and Determinism at the Origin of Life. Origins of Life and Evolution of Biospheres, 40, 370–375.
Vicente, A. (2010). Clusters: On the Structure of Lexical Concepts. Dialectica, 64(1), 79–106. doi:10.1111/j.1746-8361.2010.01223.x
Bich, L. (2010). Complex emergence and the living organization: an epistemological framework for biology. Synthese. doi:10.1007/s11229-010-9722-6
Martínez-Manrique, F., & Vicente, A. (2010). What the…!’ The role of inner speech in conscious thought. Journal of Consciousness Studies, 17(9-10), 141–67.
Amilburu, A., & Etxeberria, A. (2010). Clasificaciones y géneros naturales: ¿estipulación o descubrimiento? In A. Jaume, M. Liz, D. Pérez Chico, M. Ponte, & M. Vazquez (Eds.), Proceedings of the sixth meeting of the Spanish Society for Analytic Philosophy. Presented at the SEFA VI, Tenerife.
Arnellos, A., Spyrou, T., & Darzentas, J. (2010). Towards the naturalization of agency based on an interactivist account of autonomy. New Ideas in Psychology, 28(3), 296–311. doi:10.1016/j.newideapsych.2009.09.005
Egbert, M. D., Barandiaran, X. E., & Di Paolo, E. A. (2010). Behavioral Metabolution: Metabolism based behavior enables new forms of adaptation and evolution. In Artificial Life XII: Proceedings of the Twelfth International Conference on the Simulation and Synthesis of Living Systems.
Egbert, M. D., Barandiaran, X. E., & Di Paolo, E. A. (2010). A Minimal Model of Metabolism-Based Chemotaxis. PLoS Comput Biol, 6(12), e1001004. doi:10.1371/journal.pcbi.1001004
2009
Vicente, A. (2009). Functions and emergence: when functional properties have something to say. Philosophical Studies, 152(2), 293–312. doi:10.1007/s11098-009-9477-4
Etxeberria, A., & Ruiz-Mirazo, K. (2009). The challenging biology of transients. EMBO reports, 10, S33–S36.
Moreno, A., & Ruiz-Mirazo, K. (2009). The problem of the emergence of functional diversity in prebiotic evolution. Biology & Philosophy, 24(5), 585–605. doi:10.1007/s10539-009-9178-6
Bich, L. (2009). Downward causation and relatedness in emergent systems: epistemological remarks (pp. 591–601). World Scientific Publishing Co. Pte. Ltd. doi:10.1142/9789812793478_0037
Casado, A. (2009). Stars and Triangles: Controversial Bioethics in Spanish Film. In Bioethics at the Movies (1st ed., pp. 328–344). The Johns Hopkins University Press.
Casado, A. (2009). Bioética para legos. Plaza y Valdés.
Egbert, M. D., Di Paolo, E., & Barandiaran, X. E. (2009). Chemo-ethology of a adaptive protocell: Sensor-less sensitivity to implicit viability conditions. In Proceedings of the Ninth European Conference on Artificial Life (pp. 242–249). Presented at the ECAL09, Budapest: Springer Verlag.
Barandiaran, X. E., & Chemero, A. (2009). Animats in the Modeling Ecosystem. Adaptive Behavior, 17(4), 287–292. doi:10.1177/1059712309340847
Barandiaran, X. E., Di Paolo, E., & Rohde, M. (2009). Defining Agency: Individuality, Normativity, Asymmetry, and Spatio-temporality in Action. Adaptive Behavior, 17(5), 367–386. doi:10.1177/1059712309343819
Umerez, J. (2009). Where does Pattee’s “how does a molecule become a message?” belong in the history of biosemiotics? Biosemiotics, 2(3), 269–290.
2008
Arnellos, A., Spyrou, T., & Darzentas, J. (2008). Meaning Needs Functional Emergence: Shedding Novel Light onto Difficult Problems. Cybernetics & Human Knowing, 15(3-4), 50–56.
Neuman, Y., Arnellos, A., & Nave, O. (2008). Sign-Mediated Concept Formation. The American Journal of Semiotics, 24, 107–133. Retrieved from http://secure.pdcnet.org/pdc/bvdb.nsf/toc?openform&journal=pdc_ajs&yearrange=2001%%20-%%202011&category=0024_40911_2008#
Ruiz-Mirazo, K., & Mavelli, F. (2008). On the way towards “basic autonomous agents”: Stochastic simulations of minimal lipid-peptide cells. Biosystems, 91(2), 374–387.
Mavelli, F., Lerario, M., & Ruiz-Mirazo, K. (2008). ENVIRONMENT’: a stochastic simulation platform to study protocell dynamics. Proceedings of BIOCOMP, 2, 934–941.
Ruiz-Mirazo, K., Umerez, J., & Moreno, A. (2008). Enabling conditions for “open-ended evolution”. Biology and Philosophy, 23(1), 67–85.
Bich, L., & Damiano, L. (2008). Order in the Nothing: Autopoiesis and the Organizational Characterization of the Living. Electronic Journal of Theoretical Physics, 4(16), 343–373.
Vicente, A., & Martínez‐manrique, F. (2008). Thought, Language, and the Argument from Explicitness. Metaphilosophy, 39(3), 381–401. doi:10.1111/j.1467-9973.2008.00545.x
Arnellos, A., Spyrou, T., & Darzentas, J. (2008). Emergence and Downward Causation in Contemporary Artificial Agents: Implications for their Autonomy and Some Design Guidelines. Cybernetics & Human Knowing, 15(3-4), 15–41.
El-Hani, C. N., Arnellos, A., & Queiroza, J. (2008). Modeling a Semiotic Process in the Immune System: Signal Transduction in B-cells Activation. tripleC - Cognition, Communication, Co-operation, 5(2), 24–36. Retrieved from http://www.triple-c.at/index.php/tripleC/article/viewArticle/56
Amilburu, A. (2008). La masa sin cualidades. biTARTE, 45, 63–78.
Barandiaran, X. E., & Moreno, A. (2008). Adaptivity: From Metabolism to Behavior. Adaptive Behavior, 16(5), 325–344. doi:10.1177/1059712308093868
Barandiaran, X., E., & Moreno, A. (2008). On the nature of neural information: A critique of the received view 50 years later. Neurocomputing, 71(4-6), 681–692. doi:10.1016/j.neucom.2007.09.014
Barandiaran, X. E. (2008). Mental Life: a naturalized approach to the autonomy of cognitive agents. (PhD Thesis). University of the Basque Country (UPV-EHU), Donostia - San Sebastián, Gipuzkoa, Spain. Retrieved from http://xabier.barandiaran.net/2010/06/barandiaran_-_2008_-_phd_thesis.pdf
Barandiaran, X., E., & Ruiz-Mirazo, K. (2008). Modelling autonomy: Simulating the essence of life and cognition. Biosystems, 91(2), 295–304. doi:10.1016/j.biosystems.2007.07.001
Barandiaran, X. E., & Di Paolo, E. A. (2008). Artificial Mental Life. In S. Bullock, J. Noble, R. Watson, & M. Bedau (Eds.), Artificial Life XI: Proceedings of the Eleventh International Conference on the Simulation and Synthesis of Living Systems (p. 747). Cambridge, MA.: MIT Press.
Izquierdo, E., & Buhrmann, T. (2008). Analysis of a dynamical recurrent neural network evolved for two qualitatively different tasks: walking and chemotaxis. In S. Bullock, J. Noble, R. Watson, & M. Bedau (Eds.), Artificial Life XI: Proceedings of the Eleventh International Conference on the Simulation and Synthesis of Living Systems (pp. 257–264). MIT Press, Cambridge, MA. Retrieved from http://www.alifexi.org/papers/ALIFExi_pp257-264.pdf
Umerez, J. (2008). Book Review: A Key Conceptual Tool for ALifers. Artificial Life, 14(2), 235–238.
Moreno, A., Etxeberria, A., & Umerez, J. (2008). The autonomy of biological individuals and artificial models. BioSystems, 91(2), 309–319.
Ruiz-Mirazo, K., Umerez, J., & Moreno, A. (2008). Enabling conditions for “open-ended evolution.” Biology & Philosophy, 23(1), 67–85.
2007
Brands, M., Arnellos, A., Spyrou, T., & Darzentas, J. (2007). A Biosemiotic Analysis of Serotonin’s Complex Functionality. In Biosemiotics in Transdisciplinary Contexts (pp. 125–132). Helsinki, Umweb.
Mavelli, F., & Ruiz-Mirazo, K. (2007). Stochastic simulations of fatty-acid proto-cell models. Proceedings of SPIE, 6602, 66021B.
Ruiz-Mirazo, K., & Mavelli, F. (2007). Simulation model for functionalized vesicles: lipid-peptide integration in minimal protocells. Advances in Artificial Life, 32–41.
Mavelli, F., & Ruiz-Mirazo, K. (2007). Question 8: bridging the gap between in silico and in vitro approaches to minimal cells. Origins of Life and Evolution of Biospheres, 37(4), 455–458.
Ruiz-Mirazo, K., & Mavelli, F. (2007). Question 7: modelling minimal “lipid-peptide”cells. Origins of Life and Evolution of Biospheres, 37(4), 433–437.
Mavelli, F., & Ruiz-Mirazo, K. (2007). Stochastic simulations of minimal self-reproducing cellular systems. Philosophical Transactions of the Royal Society B: Biological Sciences, 362(1486), 1789.
Bich, L., & Damiano, L. (2007). Question 9: Theoretical and Artificial Construction of the Living: Redefining the Approach from an Autopoietic Point of View. Origins of Life and Evolution of Biospheres, 37(4-5), 459–464. doi:10.1007/s11084-007-9082-5
Arnellos, Spyrou, & Darzentas, J. (2007). Exploring Creativity in the Design Process: A Systems-Semiotic Perspective. Cybernetics & Human Knowing, 14(1), 37–64.
Arnellos, A., Spyrou, T., & Darzentas, J. (2007). Cybernetic embodiment and the role of autonomy in the design process. Kybernetes, 36(9/10), 1207–1224. doi:10.1108/03684920710827247
Ruiz-Mirazo, K., Umerez, J., & Moreno, A. (2007). Enabling conditions for “open-ended evolution”. Biology & Philosophy, 23(1), 67–85. doi:10.1007/s10539-007-9076-8
Barandiaran, X. E. (2007). Mental Life: conceptual models and synthetic methodologies for a post-cognitivist psychology. In B. Wallace, A. Ross, J. Davies, & T. Anderson (Eds.), The World, the Mind and the Body: Psychology after cognitivism (pp. 49–90). Imprint Academic.
Frenz, H., Lappe, M., Kolesnik, M., & Buhrmann, T. (2007). Estimation of travel distance from visual motion in virtual environments. ACM Trans. Appl. Percept., 4(1). doi:10.1145/1227134.1227137
Barandiaran, X. E. (2007). Mental Life: conceptual models and synthetic methodologies for a post-cognitivist psychology. In B. Wallace, A. Ross, J. Davies, & T. Anderson (Eds.), The World, the Mind and the Body: Psychology after cognitivism (pp. 49–90). Imprint Academic.
Siqueiros, J., & Umerez, J. (2007). Grasping the complexity of living systems through integrative levels and hierarchies. Worldviews, Science and Us: Philosophy and Complexity: University of Liverpool, UK, 11-14 September 2005, 250.
2006
Vicente, A. (2006). On the Causal Completeness of Physics. International Studies in the Philosophy of Science, 20(2), 149–171. doi:10.1080/02698590600814332
Ruiz-Mirazo, K., & Moreno, A. (2006). On the origins of information and its relevance for biological complexity. Biological Theory, 1(3), 227–229.
Ruiz-Mirazo, K., Stano, P., & Luisi, P. L. (2006). Lysozyme effect on oleic acid/oleate vesicles. Journal of Liposome Research, 16(2), 143–154.
Bich, L. (2006). Autopoiesis and Emergence. In G. Minati, E. Pessa, & M. Abram (Eds.), Systemics of Emergence: Research and Development (pp. 281–292). New York: Springer-Verlag.
Arnellos, A., Vosinakis, S., Spyrou, T., & Darzentas, J. (2006). The Emergence of Autonomous Representations in Artificial Agents. Journal of Computers, 1(6). doi:10.4304/jcp.1.6.29-36
Barandiaran, X. E., & Lluis, G. (2006). Autonomía, Comunicación y Evolución en redes bacterianas y tecnológicas. biTARTE, (38), 35–60.
Barandiaran, X. E., & Moreno, A. (2006). ALife Models as Epistemic Artefacts. In Artificial Life X : Proceedings of the Tenth International Conference on the Simulation and Synthesis of Living Systems (pp. 513–519). The MIT Press (Bradford Books).
Barandiaran, X. E., & Moreno, A. (2006). On What Makes Certain Dynamical Systems Cognitive: A Minimally Cognitive Organization Program. Adaptive Behavior, 14(2), 171–185. doi:10.1177/105971230601400208
Buhrmann, T., & Paolo, E. (2006). Biological Actuators Are Not Just Springs. In S. Nolfi, G. Baldassarre, R. Calabretta, J. C. T. Hallam, D. Marocco, J.-A. Meyer, … D. Parisi (Eds.), From Animals to Animats 9 (Vol. 4095, pp. 89–100). Berlin, Heidelberg: Springer Berlin Heidelberg. Retrieved from http://dblp.uni-trier.de/rec/bibtex/conf/sab/BuehrmannP06
Barandiaran, X. E., & Moreno, A. (2006). On What Makes Certain Dynamical Systems Cognitive: A Minimally Cognitive Organization Program. Adaptive Behavior, 14(2), 171–185. doi:10.1177/105971230601400208
Etxeberria, A., Umerez, J., & Ambrogi, A. (2006). Organismo y organización en la biología teórica?` Vuelta al organicismo 50 años después. Medio siglo de doble hélice. Palma de Mallorca, España: Edicions Universitat de les Illes Balears.
2005
Arnellos, A., Spyrou, T., & Darzentas, J. (2005). Dynamic Interactions in Artificial Environments: Causal and Non-Causal Aspects for the Emergence of Meaning. Systemics, Cybernetics and Informatics, 3(1), 82–89. Retrieved from http://www.iiisci.org/Journal/CV$/sci/pdfs/P416905.pdf
Vicente, A., & Martínez‐Manrique, F. (2005). Semantic Underdetermination and the Cognitive Uses of Language. Mind & Language, 20(5), 537–558. doi:10.1111/j.0268-1064.2005.00299.x
Vicente, A., & Martínez‐Manrique, F. (2005). Semantic Underdetermination and the Cognitive Uses of Language. Mind & Language, 20(5), 537–558. doi:10.1111/j.0268-1064.2005.00299.x
Lappe, M., Frenz, H., Buhrmann, T., & Kolesnik, M. (2005). Virtual odometry from visual flow. Proceedings of SPIE, 5666(1), 493. doi:doi:10.1117/12.610863
Umerez, J. (2005). Critical assessment of the impact of ELSI programs. Retrieved from http://ishpssb.org/wp-content/uploads/2012/06/viewabstract_018.html
2004
Velasco, C. A., Mohamad, Y., Gilman, A. S., Viorres, N., Vlachogiannis, E., Arnellos, A., & Darzentas, J. S. (2004). The need for user information and its relationship to device profiles. Universal Access in the Information Society, 3(1), 88–95. doi:10.1007/s10209-003-0075-5
Ruiz-Mirazo, K., & Moreno, A. (2004). Basic Autonomy as a Fundamental Step in the Synthesis of Life. Artificial Life, 10(3), 235–259. doi:10.1162/1064546041255584
Ruiz-Mirazo, K., Pereto, J., & Moreno, A. (2004). A universal definition of life: autonomy and open-ended evolution. Origins of Life and Evolution of the Biosphere, 34(3), 323–346.
Moreno, A., & Barandiaran, X. E. (2004). A naturalized account of the inside-outside dichotomy. PHILOSOPHICA, 73, 11–26.
Barandiaran, X. E. (2004). Behavioral Adaptive Autonomy. A milestone on the Alife route to AI? In J. Pollack, M. A. Bedau, P. Husbands, T. Ikegami, & R. A. Watson (Eds.), Artificial life IX: proceedings of the Ninth International Conference on the Simulation and Synthesis of Artificial Life (pp. 514–521). MIT Press.
Buhrmann, T., & Di Paolo, E. A. (2004). Closing the loop: Evolving a model-free visually guided robot arm. In Proceedings of the Ninth International Conference on the Simulation and Synthesis of Living Systems 9 (pp. 63–72). Presented at the Artificial Life IX, Boston, Massachusetts: MIT Press, Cambridge, MA.
2002
Moreno, A., & Ruiz-Mirazo, K. (2002). Key issues regarding the origin, nature, and evolution of complexity in nature: Information as a central concept to understand biological organization. Emergence, 4(1-2), 63–76.
2001
Ruiz-Mirazo, K. (2001). Condiciones físicas para la aparición de sistemas autónomos con capacidades evolutivas abiertas. Ph. D. Dissertation, University of the Basc Country, San Sebastián.
Barandiaran, X. E. (2001). Adaptive Behaviour, Autonomy and Value systems. Normative function in dynamical adaptive systems (MSc Thesis). University of Sussex, Brighton, UK. Retrieved from http://www.ehu.es/ias-research/doc/2002_ba_msth_fin.pdf
Mateus Rocha, L. (2001). The physics and evolution of symbols and codes: reflections on the work of Howard Pattee. Biosystems, 60(1), 1–4.
Umerez, J. (2001). Howard Pattee’s theoretical biology—a radical epistemological stance to approach life, evolution and complexity. Biosystems, 60(1), 159–177.
2000
Ruiz-Mirazo, K., Etxeberria, A., Moreno, A., & Ibáñez, J. (2000). Organisms and their place in biology. Theory in biosciences, 119(3), 209–233.
Ruiz-Mirazo, K., & Moreno, A. (2000). Searching for the roots of autonomy: The natural and artificial paradigms revisited. Communication and Cognition–Artificial Intelligence, 17(3-4), 209–228.
Moreno, A., & Umerez, J. (2000). Downward causation at the core of living organization. Downward causation: Minds, bodies and matter, 99–117.
1999
Bergareche, A. M., & Ruiz-Mirazo, K. (1999). Metabolism and the problem of its universalization. BioSystems, 49(1), 45–61.
Ruiz-Mirazo, K., Moreno, A., Morán, F., Peretó, J., & Merelo, J. (1999). Designing a Simulation Model of a Self-Maintaining Cellular System. Advances in Artificial Life, 379–388.
Theraulaz, G., & Bonabeau, E. (1999). A brief history of stigmergy. Artificial life, 5(2), 97–116.
1998
Ruiz-Mirazo, K., Moreno, A., & Morán, F. (1998). Merging the energetic and the relational-constructive logic of life. Proceedings of Artificial Life VI, 448–451.
Ruiz-Mirazo, K., & Moreno, A. (1998). Autonomy and emergence: how systems become agents through the generation of functional constraints. Acta Polytechnica Scandinavica, Ma91, 273–282.
Umerez, J. (1998). The evolution of the symbolic domain in living systems and artificial life. In Evolutionary Systems (pp. 377–396). Springer.
1997
Moreno, A., Umerez, J., & Ibañez, J. (1997). Cognition and life: The autonomy of cognition. Brain and Cognition, 34(1), 107–129.
1995
Umerez, J., & Moreno, A. (1995). Origin of life as the first MST—control hierarchies and Interlevel relation. World Futures: Journal of General Evolution, 45(1-4), 139–154.
Umerez, J. (1995). Semantic Closure: a guiding notion to ground Artificial Life. In Advances in artificial life (pp. 77–94). Springer.
1994
Umerez, J. (1994). Jerarquías Autónomas.-Un estudio sobre el origen y la naturaleza de los procesos de control y de formación de niveles en sistemas naturales complejos. Ph. D. Dissertation, University of the Basque Country.
Moreno, A., Etxeberria, A., & Umerez, J. (1994). Universality without matter. In Artificial Life IV (pp. 406–410).